FMO06642.5prime Sequence
379 bp (-60 high quality bases) assembled on 2008-10-01
> FMO06642.5prime
TGCGAGGGCTGCAAGTCCTTCTTTGGCCGCTCTTACAACAACATCAGCAC
CATCAGCGAGTGCAAGAACGAGGGCAAGTGCATCATCGACAAGAAGAACC
GCACCACCTGCAAGGCGTGCCGCTTGAGGAAGTGCTACAACGTGGGCATG
TCGAAGGGGGGATCCCGCTACGGACGTCGCTCCAACTGGTTCAAGATCCA
TTGTCTGCTGCAGGAGCACGAACAGGCCGCCGCAGCGGCGGGCAAGGCGC
CTCCATTATCGGGTGGCGTATCGGTGGGTGGTGCCCCGTCGGCCTCTTCC
CCGGTGGGCTCGCCACACACTCCCGGATTTGGGGACATGGCCGCCCATTT
GCACCACCATCATCAGCAACAACAGCAGC
FMO06642.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:58:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kni-RB | 1911 | CG4717-RB | 179..557 | 1..379 | 1850 | 99.2 | Plus |
| kni-RA | 2100 | CG4717-RA | 368..746 | 1..379 | 1850 | 99.2 | Plus |
| knrl-RB | 2925 | CG4761-RB | 1055..1272 | 1..218 | 580 | 84.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:58:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20693684..20694049 | 379..14 | 1785 | 99.2 | Minus |
| 3L | 28110227 | 3L | 20599778..20599982 | 218..14 | 515 | 83.4 | Minus |
| 3L | 28110227 | 3L | 21816347..21816480 | 85..218 | 355 | 84.3 | Plus |
Blast to na_te.dros performed 2014-11-28 18:58:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2443..2519 | 34..113 | 150 | 67.5 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 983..1011 | 351..379 | 109 | 86.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1551..1578 | 352..379 | 104 | 85.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2388..2415 | 352..379 | 104 | 85.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6761 | 352..379 | 104 | 85.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6782 | 352..379 | 104 | 85.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6803 | 352..379 | 104 | 85.7 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7955..7982 | 352..379 | 104 | 85.7 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9399..9426 | 352..379 | 104 | 85.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6868..6900 | 345..377 | 102 | 78.8 | Plus |
FMO06642.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:34 Download gff for
FMO06642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kni-RA | 368..746 | 1..379 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:32:48 Download gff for
FMO06642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kni-RA | 353..731 | 1..379 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:43:30 Download gff for
FMO06642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kni-RA | 368..746 | 1..379 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:43:30 Download gff for
FMO06642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20693684..20694047 | 16..379 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:34 Download gff for
FMO06642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20686784..20687147 | 16..379 | 99 | <- | Minus |
