FMO06644.5prime Sequence
1164 bp (927 high quality bases) assembled on 2008-10-01
> FMO06644.5prime
CAGTCGACATGAACATACTAAATCCAGGCAAATTCAAGTGTATCGTATTT
GACCAACTGCGTCACACTTGGACATTTCTTTTGTTTATCTGCGACTTCCT
GGCGAAGATTTACAGGACGCCTCGTATAACTGCCCACCAGGAGCAGCTGG
CCAACCATAATAATAACAACAACAATAATAACGATCTGATCATGGAACAG
GACATGCCAGAGGAGGAAGTGGGTCAGCCAGAGGAGGCTCTGCCGCAGCA
GGACAACGGTGAGGTTGTCGACCGTTTCAATGCCATTCAGGCTGCCGTGG
AGCTCATGGACGCAGCCAGCGATTTGGCCGAGGAAGAGGAGGAAGAAGAC
GACGACGTGGACGTGGATGTGGACTACGGCGATACAGATTCGGAGTCAGA
ATTCGAAGAGATGTACTCCGACGAGTGGACCAGTTCCAGCGATGAGCTGG
ACGAGGGTACAGAGCTATCTAAGAGTGTCTTGAATGTCTTCCTCTCGTCG
GATAAACAGCAATCTCAAATGGCCGGACAGATTCCCATGTACGCCTTCCA
GCCGTTGCGTCTCGTCAAGTGCCAGTACAGGGATAAACATATACCCGGTG
GATTCCCTCTGGCACGCAGTGGCCACCGGATCATTGCCTCCAATTCGCAT
CTGTATTCCCTGGGTGGCTACAATCCCGCGGAGCGCCATGTCTGCATCAC
GCCACGGCCGATGTCTTCTCTTCCAGGAGCTGTGGAGCTACAACTTTGCC
ACGAGAACCTGGAGGCTGGAGCTGAATGCGGGCAATGCCGCCAATTATGC
CCGTGGAGCTGGCCTCCAATTGCATTGACCATTCACAATAACGTGTTGAT
TTCTCATGGGCGGCACTGGTTATCCATTGGGAGTATCCTGCTCCAACGAC
TGTTACGTTACCGAACGGGCAGCGCTGGGCGCGACAACGGGGCGGTGGAT
CGGCTCCCAGGTTAAGGGTGACCTGCCCACGGCCTCATTACGGAACCGGG
AAATATTGATCCACTAAGCCACTTTCTCTACCCATCGGGCGAACCGACGG
GATTTGATTAACCTTGTGAGTTTATCCGTGGAATTTGCGCCCGGCTATAA
TGGAAGAATGGTGTACCTTAAGTCTGTCCCGGAAGATGCAGACAGACCCA
AAAATGGCGCTCAC
FMO06644.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:26:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| slim-RC | 2510 | CG5186-RC | 510..1634 | 9..1150 | 4775 | 96 | Plus |
| slim-RA | 3081 | CG5186-RA | 510..1634 | 9..1150 | 4775 | 96 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:25:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18441474..18442313 | 9..851 | 4050 | 99.5 | Plus |
| 2R | 25286936 | 2R | 18443661..18443863 | 859..1069 | 365 | 85.8 | Plus |
Blast to na_te.dros performed 2014-11-28 23:25:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 22..50 | 153..181 | 118 | 89.7 | Plus |
| mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 7060..7088 | 153..181 | 118 | 89.7 | Plus |
| Stalker4 | 7359 | Stalker4 STALKER4 7359bp | 2873..2928 | 158..211 | 112 | 71.4 | Plus |
| Stalker | 7256 | Stalker STALKER 7256bp | 2767..2822 | 158..211 | 112 | 71.4 | Plus |
FMO06644.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:05 Download gff for
FMO06644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slim-RA | 503..1477 | 1..983 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:31:29 Download gff for
FMO06644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slim-RA | 511..1485 | 1..983 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:01:26 Download gff for
FMO06644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slim-RA | 503..1477 | 1..983 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:01:26 Download gff for
FMO06644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18441467..18442313 | 1..851 | 99 | -> | Plus |
| 2R | 18443655..18443782 | 852..983 | 92 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:05 Download gff for
FMO06644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14331160..14331287 | 852..983 | 92 | == | Plus |
| arm_2R | 14328972..14329818 | 1..851 | 99 | -> | Plus |
