FMO06646.5prime Sequence
1178 bp (962 high quality bases) assembled on 2008-09-29
> FMO06646.5prime
CAGTCGACATGACGGACTTTGTTGAGCTGATGAACAGCATGTCCAGTACA
TTCAATAGCGACTGTGCTACTTCAACAGCGGAGGGTGGTACTTTGCTAAA
TCTGAACTTGGCGGAAGACAAAACCCTCAAGTGGCGTAATTTGGCCAATA
ACCAGTTCGCTAGTAAAGAAAAGAAGCACAAGGACAAGGAGGAGGAGGAG
CGCAAGGAGGCAAGGAATCAAGAGGAAATCGAAGACATCAAAGCACTTTT
GGCAGATGTTGTCGATGCGGCCGCTGTCAAGCTGGAAGAAGAAGAAGCGC
AGAATGCAGAAAAAGTCGAACCACATACAAAATGCGAAATAGAGGAAGAA
GGTAGGAAGGAAATGGAGTACGATCAAGATGTCGCAAAACAAGACTCCGA
AATGGAAAAAAAGCAGAATGGCAAAGCAACATCCATAACAGTAAAGATGG
AAAGCAACGAGCGTGCAGAGAAACACGCAACGGAAATTGCAACGACGTCG
ACAGAGAGATGGGAAAACGAAAGCTTTAAAACTGAGCAGCAAAATAAAAA
AGCTGCTGAGAAAGAAGAAGAACCCATACTAGCAGCAACACAAAAATTGG
AAGCAAATGCAGAACCACTGACAACAACAAGAATTGAGGTAGCAGTAGCA
TCTCCACTTGTTGTTAGTTCTGCTAGCGTTAAACTCGCTGCTGACGCAAC
CAACCAAATGCGAGCAGCGACGTCGGCAGGAGCAGCGACATTAGCTGATA
AAAATGTACAAGTTTCGCCCGGTGGAACGCGACGGTCTCGAAGAACACCC
AGACCCATAGACACGCCCCACTTCAGTTACTGATGAACATGTTCAGGGTG
GAGAAATAAAATATTTGGGAAAGTCGGAGCAGTATACGGATTGTAAGTAG
CCATCTGGAGAGGTTCCCCACTGGGACGATAAATACTGCTTATTGTCAGA
CTGCAGTTGAAAAGGTGACCGGGACCAAACCCGTCATTACCTGCCATTAT
CCTCCTGAAGGAAACTCCGGCTCCCTGCCTCCGAAACGGAGGAAGGGTCG
AGCTCAGGGAAAATAAGACCCGGATGCCGAGGGTGAAACCAATGGTAGGT
TAATTTTAACCCTGCCAGGATCCTTAAGGGAGAAAGAACCCAGGAACGCT
AAGGGAACCTCCGGGATGTAACCGATAG
FMO06646.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G9a-RB | 7235 | CG2995-RB | 873..2016 | 9..1178 | 4835 | 95.8 | Plus |
| G9a-RA | 6538 | CG2995-RA | 873..2016 | 9..1178 | 4835 | 95.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 246850..247599 | 9..758 | 3750 | 100 | Plus |
| X | 23542271 | X | 248382..248581 | 756..964 | 565 | 94.7 | Plus |
Blast to na_te.dros performed 2014-11-28 20:16:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6753..6927 | 472..656 | 143 | 57.8 | Plus |
| Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 5921..5998 | 565..643 | 131 | 64.6 | Plus |
FMO06646.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:42:34 Download gff for
FMO06646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| G9a-RA | 865..1819 | 1..964 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-29 11:27:32 Download gff for
FMO06646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| G9a-RA | 836..1790 | 1..964 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:00:09 Download gff for
FMO06646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| G9a-RA | 865..1819 | 1..964 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:00:09 Download gff for
FMO06646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 246842..247596 | 1..755 | 99 | -> | Plus |
| X | 248382..248603 | 756..989 | 93 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:42:34 Download gff for
FMO06646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 140875..141629 | 1..755 | 99 | -> | Plus |
| arm_X | 142415..142636 | 756..989 | 93 | == | Plus |
