FMO06647.5prime Sequence
1142 bp (859 high quality bases) assembled on 2008-09-29
> FMO06647.5prime
CAGTCGACATGGTCAACAAACAGTATTCGGCCACCGATCTGGAGGCTTTT
ATGAAGATTGCCGCCAACTGGCAAAATTCCAATCACAACTTGCTGGAGGG
CGTCGACATAAAGACGGAAATGACACAGTACATGAACAGTCCTTCCATGA
ACATGTACAAGAAGAGGGAACGCACCCAGAACTGGAACCACCAGGAGAAG
AAATACCTACTCGATCTGTGTCGCAAGGACATGCGCATTATCGAGAACAA
GAGATTGGATGCCGGTCTGACCGCCGTGAAGAACAAGGCATGGAAGATTA
TCCACCAGAAGTTCTCCAATCAGTTTGGCACCGATCGCACCTGCAATCGC
CTGAAGGAACAGTGGCGTCGCATGAAGGCATGTACTCGCAACGAGATCCT
GGACTACAATAATCGCCTGGCCAGGTTTGGAGCAGAGGTGGCCGATCGCA
AGAAGCCATCTCCGTTCACCTTCGAGGTGTGGGATTTCATGCAGGAGGCG
AAGAAGGCATGCAAATCGGAGGCCCTGGATGGCATTGATTACTCTAAGAT
TCCACTGGCCTTGGAGGAGGGTTTTGAGTATCGTGAGGATTACAAATTCA
ATCCCGAAGACCACGACATGGATGACAGCCGCACACCGCCGCAGGAACTG
TGCGATGTGGACATCAAGGAGGAGGAGAACAAACGAGACCTTCAACGAGA
CCTTCAACCATCACCACCTCAACCATAGCGACATCCTTGGCAGCGGCGAG
CGTCTCAGTGTGTCGCCTAATCACAGCATCAGTCGCAACGGGATCCACGA
GGCCGAGAGTCCCGCCACGATTTCCACATCTTGTGTCCTGGAACTCGAGC
GGTGCCTATATGGGCCGGAGGGAAGTGACATGTCCGGGCTTCCAGCCAAC
TTCAACATGAAACAACATTATCCGCCACGCTTGGAGCACTGAATGCCCTC
CTTTTGGCCAATTTTCCAGTGCAGCAGCAGCGGGCAGCGGCCGCCATCAC
CCAACCACCAGCAACAGGCCCGGTTGCCTGCATCACAGCAAATTACAACA
TCACAATAACAATAACACGAGGACGAATAAGAGCAGCATGGAAGCGCTAT
TCTTAAGAAACCGCGCACCATCCAGTGGTAAGCATGTTGTTG
FMO06647.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| apt-RA | 2827 | CG5393-RA | 377..1501 | 9..1139 | 4720 | 95.8 | Plus |
| apt-RC | 2783 | CG5393-RC | 333..1457 | 9..1139 | 4720 | 95.8 | Plus |
| apt-RD | 2762 | CG5393-RD | 312..1436 | 9..1139 | 4720 | 95.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23597059..23597320 | 117..378 | 1310 | 100 | Plus |
| 2R | 25286936 | 2R | 23597693..23598058 | 626..997 | 1255 | 94.1 | Plus |
| 2R | 25286936 | 2R | 23597383..23597630 | 378..625 | 1240 | 100 | Plus |
| 2R | 25286936 | 2R | 23596891..23596997 | 11..117 | 535 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:55:39 has no hits.
FMO06647.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:19:04 Download gff for
FMO06647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| apt-RD | 341..1344 | 1..1011 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-29 11:27:34 Download gff for
FMO06647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| apt-RA | 367..1370 | 1..1011 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:43:14 Download gff for
FMO06647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| apt-RD | 304..1307 | 1..1011 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:43:14 Download gff for
FMO06647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23596883..23596997 | 1..117 | 96 | -> | Plus |
| 2R | 23597060..23597320 | 118..378 | 100 | -> | Plus |
| 2R | 23597384..23597630 | 379..625 | 100 | -> | Plus |
| 2R | 23597693..23598071 | 626..1011 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:19:04 Download gff for
FMO06647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19484406..19484520 | 1..117 | 96 | -> | Plus |
| arm_2R | 19484583..19484843 | 118..378 | 100 | -> | Plus |
| arm_2R | 19484907..19485153 | 379..625 | 100 | -> | Plus |
| arm_2R | 19485216..19485594 | 626..1011 | 94 | | Plus |
