FMO06650.5prime Sequence
1132 bp (904 high quality bases) assembled on 2008-10-01
> FMO06650.5prime
CAGTCGACATGTTCGAACTAGAGGATTATTCGAGCGGCATACATGAGGGA
TTCTTCAGCAAATATGCGGATGCGGCTGGACCCTCGCTAGACTTTTATGT
ATCCGACTCGATGCAGGAGATGCTGAACGTGGACATCCGCGCAGAGATCG
CCAATGTGGTGGGCAGTTCCAGCAGCGACTTGACCTCGTCCCTGGACCAA
ACACTGGAAGCTATATCCGCGATAAACAACAACCAGAGCAATGGAAACAG
CAGCCAGTCAGCTTCTTACAATGCGAATGCGAATTTTCTGACCAGCAGCG
GACTCCACGCCTCACCCACAGCGAAATGGATGGGCTCGTCGGCCAATTTT
TGGTCCAACAGCGATTACTATGCGGATCTGGGGGCATGTGTGAACCCCAT
TTCCGTAATGCCACTGATAAATTCGACTTCTGCAGGAATGTTCTCGCCAA
AAAAAAACAAGACAGCCTCAAGTACGCAGGGAAGATCGGGAGCGGTGCCC
TCGTCGCCCAGCGCCGAAAGGGATCAGCACAAATCGCACCTGACATTTTC
GCCGGCTCAGATGAAGGTCAGTGCAGGATCCATGCGGCGGGACCAGGTGA
TGGCACACATTCCCAAGCAAATATCCGTGGTCACGGGCACCGGAACCACA
GCGCCCGCCACAATGGCCACCAATTCGGTGCTTCAACGGCGTAATTCCTC
GGCCGTGGATGCTGTACGTAAGGATTTGGTCAAGAGCTGCGTAAAGCACA
ATCCAGTCCAGTGCCCAATTCTTGGAGGAGCTGGGCAAGGGAAAAGGATC
AACACTGCTAAATGCCAGTGTTGGGGCGACCAACACCATTAAACTGGCGG
CCGGTATTCGGGGGGTAACTTTTGCCAACAGTGCAGCCTACCAAAGCTGA
AGCAAAGTTCCTTGTTTAATTACCAGGCGGTATTTCGCCAGGAGCAGGAT
CCATTATGGTCTTCAAGCGGGAAGGACTCAATAAGCGAAGACTGCGGCCA
GCCACCCCGCCAAAAAGCATTGCTTCCGGCGCTGCCGCCCGCATCATCAA
ATGGCGAAGCAACTACAGCCTGGGGATACACACCTCCCGTCCTCCTCATC
TGCATCCTCCTCCCCTAGGAATGGTGAGCAAC
FMO06650.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:43:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| jumu-RA | 3860 | CG4029-RA | 345..1474 | 7..1132 | 4800 | 96 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:43:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10358098..10359166 | 68..1132 | 4220 | 94.7 | Plus |
| 3R | 32079331 | 3R | 10350526..10350588 | 7..69 | 315 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:43:00 has no hits.
FMO06650.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:25 Download gff for
FMO06650.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| jumu-RA | 339..1474 | 1..1132 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:31:27 Download gff for
FMO06650.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| jumu-RA | 337..1472 | 1..1132 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:16:46 Download gff for
FMO06650.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| jumu-RA | 339..1474 | 1..1132 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:16:46 Download gff for
FMO06650.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10350520..10350587 | 1..68 | 95 | -> | Plus |
| 3R | 10358099..10359166 | 69..1132 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:25 Download gff for
FMO06650.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6176242..6176309 | 1..68 | 95 | -> | Plus |
| arm_3R | 6183821..6184888 | 69..1132 | 95 | | Plus |
