FMO06652.5prime Sequence
1171 bp (1016 high quality bases) assembled on 2008-10-01
> FMO06652.5prime
CAGTCGACATGAACATGAATCAGTACTACCACCTGGACAATGGGAAAAAT
GTGATGTTTATGAACGATGCATCCAGCACCAGTGGCTATAGCAGCAGTAC
ATCACCCAACTCCACCAACCGATCCTTTTCACCAGCCCACTCCCCGAAAA
CCATGGAACTGCAAACGGACTTCGCCAATCTTAATTTGCCCGGCGGCAAT
TCACCACACCAGCCGCCAATGGCAAACTCACCATACCAGAATCAGCTGTT
GAACAACGGCGGAATTTGCCAATTGGGTGCTACCAATTTAATAAACTCCA
CTGGCGTTAGTTTCGGCGTTGCTAATGTCACCAGTTTTGGCAACATGTAC
ATGGATCACCAGTACTTTGTGCCCGCTCCGGCCACTGTGCCACCGTCCCA
AAACTTTGGATACCATCAAAATGGCCTGGCATCTGACGGCGATATCAAAC
ACGTGCCGCAGCTGCGGATCGTTGAGCAACCGGTGGAGAAGTTCCGCTTT
CGGTACAAGAGCGAGATGCATGGAACACATGGATCGCTAAATGGCGCCAA
TTCGAAGCGGACGCCCAAAACCTTCCCGGAGGTTACACTGTGCAACTACG
ATGGACCCGCCGTCATCCGGTGCAGTTTGTTCCAAACTAACTTGGACAGC
CCACATTCCCATCAGCTGGTCGTGCGCAAGGACGATCGGGATGTGTGCGA
TCCGCATGATTTGCACGTGTCCAAGGAGCGCGGCTATGTGGCGCAATTTT
ATCAACATGGGCATCATACACACCGCCAAGAAGTACATATTCGAGGAACT
GTGCAAGAAGAAGCAGATCGCCTGGTCTTTCAGATGAACCGCCGCGAGTT
GTCCCACAAACAGCTACAGGAACTGCATCAGAAGACAGAGCGTGAGGCCA
AGGACATGAACTTGAACCAGGTGCGGCTCCTGCTTTGAGCCTTTAAAATT
GAGGACAACCGGCGCATGGGTTCCACTTGCACCGCCTGTAATACAGCAAT
GAATCAATAACCGCAAGTCGGACAAACTGGAAAAGCTTCCCATCGTCCGC
TTGAACCAAACCCTACTGGCGGGTTGATGGCCACGATGAAGCTTATTCCT
ACGGTGGAAAAGTCAACCATGAAAAACATATACTGAGTCTTCAGAGAAGA
TGAAGAACGGGAACCATTGGG
FMO06652.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:14:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rel-RA | 3499 | CG11992-RA | 543..1643 | 9..1112 | 5055 | 97.9 | Plus |
| Rel-RB | 3351 | CG11992-RB | 395..1495 | 9..1112 | 5055 | 97.9 | Plus |
| Rel-RC | 3042 | CG11992-RC | 86..1186 | 9..1112 | 5055 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:14:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9046521..9047435 | 923..9 | 4450 | 99.6 | Minus |
| 3R | 32079331 | 3R | 9046071..9046229 | 1080..919 | 305 | 90.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:14:12 has no hits.
FMO06652.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:52 Download gff for
FMO06652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rel-RC | 80..1190 | 1..1115 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:35:50 Download gff for
FMO06652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rel-RA | 537..1647 | 1..1115 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:08:54 Download gff for
FMO06652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rel-RC | 80..1190 | 1..1115 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:08:54 Download gff for
FMO06652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9046122..9046227 | 921..1027 | 93 | -> | Minus |
| 3R | 9046524..9047441 | 1..920 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:52 Download gff for
FMO06652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4871844..4871949 | 921..1027 | 93 | -> | Minus |
| arm_3R | 4872246..4873163 | 1..920 | 99 | | Minus |
