FMO06654.5prime Sequence
1036 bp (884 high quality bases) assembled on 2008-10-01
> FMO06654.5prime
ATTAAACAAAGTTATCAGTCGACATGGCGTTCGGGGCGGTACTACACACC
AGCCAGCACAATATCGGTCGCAGTGAACCGCCGGTGGGCGTGGGCGATCC
CTGCGCCGGATGCAACAAGCCCATCCTGGACAAGTTCCTGCTGAATGTCC
TGGAACGCGCCTGGCACGCCTCCTGCGTCCGCTGCTGTGAATGCCTCCAA
CCGCTCACCGACAAATGCTTCAGCCGCGAATCGAAGCTCTACTGTCGCAA
CGATTTCTTCAGACGTTACGGCACCAAGTGCAGTGGGTGTGGCCAGGGTA
TCGCGCCATCGGATCTAGTGCGAAAGCCCAGGGACAAGGTCTTCCACCTA
AACTGCTTCACCTGCTGCATCTGCCGCAAGCAATTGAGCACAGGTGAGCA
GCTCTACGTGCTGGACGACAATAAGTTCATCTGCAAGGACGACTATCTGC
TGGGCAAGGCGCCATCCTGCGGCCACAATTCGCTGAGCGATTCATTAATG
GGCTCGGCGAGCGAAGACGATGACGACGATGATCCGCCGCATTTGCGGGC
CACGGCACTCGGATTGGGCGTACTGGGGCCCAACGGACCCCGACTCAGCG
GGCGGACCTCTGGGCACATCGGATATATCAGTACAAAGCATGAGCACCGA
TAGCAAAAATACCCATGACGATTCCGATCAGGGCTCCTTGGACGGCGATC
CGGATGGACGTGGCGATTCCCAGGCGGAGAACAAAGTCCCGACGATGCCA
ACGGATCGAAGCGACGCGGTCCGCGCACCACCATCAGGCCAAACAGCTGG
AGGTGCTCAAGACGGCCTTCAATCAGACGCCGAAGCCGACACGCCACATC
AGGTAGCACTGGCCAAGGAGACCGGGCTGCCATTGCGAGTATACAGTGTG
ATCCAGATAAACGTCAAAGAACGACGCATGAATAATCACAGCTGGGCGCC
CGCCCTTTCGTGGCGCCGGAAATGAGGACTACCCATGAACCTTCGCCCGA
GACTGATGACGATCGGTTTCCCTATTCGCGGCGAAG
FMO06654.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:43:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lim1-RA | 3081 | CG11354-RA | 799..1795 | 24..999 | 4300 | 96.8 | Plus |
| Lim1-RB | 2708 | CG11354-RB | 170..701 | 489..999 | 1975 | 94 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:43:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8787610..8787839 | 489..260 | 1150 | 100 | Minus |
| X | 23542271 | X | 8788734..8788930 | 262..66 | 985 | 100 | Minus |
| X | 23542271 | X | 8768751..8768943 | 682..489 | 920 | 99.5 | Minus |
| X | 23542271 | X | 8768063..8768278 | 890..678 | 885 | 97.2 | Minus |
| X | 23542271 | X | 8804962..8805006 | 68..24 | 225 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 22:43:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-A | 13424 | TART-A 13424bp | 240..317 | 509..589 | 118 | 64.2 | Plus |
| TART-A | 13424 | TART-A 13424bp | 11418..11495 | 509..589 | 118 | 64.2 | Plus |
FMO06654.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:35 Download gff for
FMO06654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lim1-RA | 793..1658 | 16..881 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:21:41 Download gff for
FMO06654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lim1-RA | 764..1629 | 16..881 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:17:02 Download gff for
FMO06654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lim1-RA | 793..1658 | 16..881 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:17:02 Download gff for
FMO06654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8788734..8788929 | 67..262 | 100 | <- | Minus |
| X | 8804964..8805012 | 16..66 | 92 | | Minus |
| X | 8768072..8768274 | 682..881 | 98 | <- | Minus |
| X | 8768752..8768942 | 490..681 | 99 | <- | Minus |
| X | 8787610..8787836 | 263..489 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:35 Download gff for
FMO06654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8662105..8662307 | 682..881 | 98 | <- | Minus |
| arm_X | 8662785..8662975 | 490..681 | 99 | <- | Minus |
| arm_X | 8681643..8681869 | 263..489 | 100 | <- | Minus |
| arm_X | 8682767..8682962 | 67..262 | 100 | <- | Minus |
| arm_X | 8698997..8699045 | 16..66 | 92 | | Minus |
