FMO06656.5prime Sequence
471 bp (-77 high quality bases) assembled on 2008-10-01
> FMO06656.5prime
AAAACGAACTTATCAGTCGACATGATGGATTTGTCGCCAAACAATCAAAT
CGAGGACAGAAAACCCATCCTAACCGCCGACGGCCTGGTTCAGACTTCGA
ACTCCCCCTTCGAGCCGACCATATCGCAGGAGACGCAAACATCCAACGGA
ATCGGCGGCCAGTGCCATCTGACGGTTGACCAGTTGGACATTGAGATTCT
GCCGATAATCTACGACATTGTGCGCTGCGTGGAAAAGGATCCTCTGGAGA
ACGCCGTTAAGCTGCGCGAGTCCCAGGATTGCAACCACAAGATCTTTGAA
CTTCAAAAACGCTTCGAATCGGCACGCGAGCAAATCCGCCAGCTCCCCGG
GATCGATTTCAATAAGGAGGAGCAGCAACAGAGACTGGAACTACTGCGAA
ATCAGCTGAAGCTTAAGCAGCAGCTAATTCGCAAATACAAGGACACAGAG
TTCGCAAGCTTTCTAGACCAT
FMO06656.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:10:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MED9-RC | 871 | CG42517-RC | 63..494 | 22..453 | 2145 | 99.8 | Plus |
| CG42518-RA | 871 | CG42518-RA | 63..494 | 22..453 | 2145 | 99.8 | Plus |
| CG42518-RB | 825 | CG42518-RB | 44..448 | 49..453 | 2025 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:10:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18167317..18167522 | 22..227 | 1015 | 99.5 | Plus |
| 2R | 25286936 | 2R | 18167771..18167934 | 290..453 | 820 | 100 | Plus |
| 2R | 25286936 | 2R | 18167657..18167721 | 227..291 | 325 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 19:10:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6791..6854 | 360..424 | 115 | 66.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1089..1150 | 365..426 | 112 | 64.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1128..1204 | 371..449 | 111 | 62 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6810..6865 | 368..423 | 109 | 66.1 | Plus |
FMO06656.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:35 Download gff for
FMO06656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED9-RC | 63..499 | 22..459 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:21:32 Download gff for
FMO06656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED9-RC | 41..477 | 22..459 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:02:07 Download gff for
FMO06656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42518-RA | 63..499 | 22..459 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:02:07 Download gff for
FMO06656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18167306..18167522 | 13..227 | 96 | -> | Plus |
| 2R | 18167658..18167721 | 228..291 | 100 | -> | Plus |
| 2R | 18167773..18167939 | 292..459 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:35 Download gff for
FMO06656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14054811..14055027 | 13..227 | 96 | -> | Plus |
| arm_2R | 14055163..14055226 | 228..291 | 100 | -> | Plus |
| arm_2R | 14055278..14055444 | 292..459 | 98 | | Plus |
