FMO06657.5prime Sequence
482 bp (482 high quality bases) assembled on 2008-09-29
> FMO06657.5prime
CAGTCGACATGGCTGAGGAATCATTCTACGGAGTCACTTTGACCGCCGAG
AGCGACAGCGTCACGTGGGATGTGGACGAGGACTACGCACGCGGCCAGAA
GCTGGTCATCAAACAGATCCTCTTGGGCGCCGAGGCCAAGGAGAACGAGT
TCAACGTGGTCGAGGTGAACACACCCAAGGACTCCGTGCAAATTCCCATC
GCCGTATTGAAGGCCGGAGAGACCCGCGCCGTCAATCCCGACGTGGAGTT
CTACGAGTCGAAGGTGACATTCAAGCTGATCAAGGGCAGCGGACCCGTCT
ACATCCACGGGCACAACATCAAGGACGATGTGGAGGTGGTCGACATGGAG
GAGGATGACGAGGAGGATGATGTCGCCGAGGACGAGGAGGACGAGCACCC
AAAGAAGCGCGCCAAGATCGAGAACGCCGCCGATGGTAAAAATGCCAAGA
ACAACAAGAAGAAGGCAAGCTTTCTAGACCAT
FMO06657.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:57:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nlp-RB | 914 | CG7917-RB | 83..539 | 8..464 | 2285 | 100 | Plus |
| Nlp-RA | 1080 | CG7917-RA | 249..705 | 8..464 | 2285 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:57:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30009676..30009977 | 163..464 | 1510 | 100 | Plus |
| 3R | 32079331 | 3R | 30005287..30005425 | 30..168 | 695 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:57:45 has no hits.
FMO06657.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:18 Download gff for
FMO06657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nlp-RA | 249..714 | 8..475 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-29 11:28:00 Download gff for
FMO06657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nlp-RA | 249..714 | 8..475 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:43:07 Download gff for
FMO06657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nlp-RA | 249..714 | 8..475 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:43:07 Download gff for
FMO06657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30005033..30005055 | 8..30 | 100 | -> | Plus |
| 3R | 30005288..30005421 | 31..164 | 100 | -> | Plus |
| 3R | 30009678..30009986 | 165..475 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:18 Download gff for
FMO06657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25830755..25830777 | 8..30 | 100 | -> | Plus |
| arm_3R | 25831010..25831143 | 31..164 | 100 | -> | Plus |
| arm_3R | 25835400..25835708 | 165..475 | 98 | | Plus |
