FMO06658.5prime Sequence
949 bp (-60 high quality bases) assembled on 2008-09-29
> FMO06658.5prime
CCAAGTTATCAGTCGACATGGCCAATTTCGATCTGACACGCATCAATTGC
CAGTTTTTGGACAGGCATTTGACCTTCCCGCTGCTGGAGTTCTTGTGCGG
CAAGGAGATCTACAACCAGCAGGAGCTGCTGGAGTACATTTTGGAGACGG
TGAACAAGACGAACATGATCGATTACACGATGGACACCCGCAAGCGTCTC
AATCTCAGCCAGGAGATGCCCGAGGAGCTCGTGCAGCGCAAGGCGGAGGT
CCTGGCCACGCTTAAGCAGCTGCAGAACGAGGTGGCACCCATCATGAAGG
CCACCGACATTCTTAAGAACGGTGAGAGCATGAAGGACTCGAAGACCTTC
GTCAACGCCCTTCAGAAGGACTACAATTTTAAGGTGGAGCACCTGGAGAG
CGCCTACAAGCTGGCCAAGTACCTCTACGAGTGCGGCAACTATCAGGAGT
CCACCTCTTACCTGTACTTCTGCCTCATCGTCATGTCGCCCAACGACAAG
AACTACCTTAATGTGCTGTGGGGCAAGCTGGCCGCCGAGATTCTGACCCT
CAACTGGAACACTGCTCTGGAGGATCTGACGCGTTTGCGCGACTACATTG
ACAACGCCAACTTCAGCACCATCCAGGCCCTGCAGCAACGCACCTGGCTG
ATCCACTGGTCGGTCCAGGTCTTCTTCAATCACCCCAAGGGACGCGATCT
CATTATTGAGATGTTCCTGTACAAGCCCCTGTATTTGAACGCCATTCAGA
CAATGTGTCCCGCACATCATGCGTTACTTGGCCACCGCCCGTAAATCATC
AACTGCACCCGCCGCAATGCTCTAAAAGGATTTGATCAAGTGATCCAACA
GGGAGGTCGCACACGTTCCGCGATCCCATCACCGAGTTTCTCGAGTGTCT
GTCCTGAACTTTGATTCCGAGGGAGCGCGCCTGAGCCTGCAGAGTGCCG
FMO06658.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Int6-RA | 1520 | CG9677-RA | 108..1036 | 17..948 | 4285 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16786257..16786651 | 500..106 | 1975 | 100 | Minus |
| 3L | 28110227 | 3L | 16785734..16786172 | 941..499 | 1685 | 95.1 | Minus |
| 3L | 28110227 | 3L | 16786744..16786834 | 107..17 | 455 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 20:39:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dnet\R1B | 2038 | Dnet\R1B NETR1B 2038bp | 7..48 | 221..180 | 111 | 73.8 | Minus |
FMO06658.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:33:49 Download gff for
FMO06658.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Int6-RA | 108..1036 | 17..949 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-29 11:27:48 Download gff for
FMO06658.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Int6-RA | 156..1084 | 17..949 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:24:19 Download gff for
FMO06658.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Int6-RA | 108..1036 | 17..949 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:24:19 Download gff for
FMO06658.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16785724..16786170 | 501..949 | 95 | <- | Minus |
| 3L | 16786257..16786649 | 108..500 | 100 | <- | Minus |
| 3L | 16786744..16786834 | 17..107 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:33:49 Download gff for
FMO06658.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16778824..16779270 | 501..949 | 95 | <- | Minus |
| arm_3L | 16779357..16779749 | 108..500 | 100 | <- | Minus |
| arm_3L | 16779844..16779934 | 17..107 | 100 | | Minus |
