FMO06660.5prime Sequence
425 bp (425 high quality bases) assembled on 2008-09-29
> FMO06660.5prime
CACCGTTATCAGTCGACATGGTGCGTATGAACGTATTGGCCGATGCCCTG
AAGTGCATAAACAACGCCGAGAAGCGTGGCAAGCGGCAGGTGCTGCTGCG
TCCCTGCTCCAAGGTGATCATCAAGTTCCTGACCGTGATGATGAAGCATG
GCTATATCGGCGAATTCGAGATCGTCGAGGATCACCGTGCCGGCAAGATC
GTTGTCAACCTGACCGGTCGGCTAAACAAGTGCGGCGTCATCTCGCCCCG
CTTCGATGCGCCCATCAACGACATCGAGAAGTGGACCAACAATCTGTTGC
CCTCGCGTCAGTTTGGTTACGTTGTGCTCACCACCTCTGGCGGCATCATG
GACCACGAGGAGGCTAGGAGAAAACATTTGGGAGGCAAAATTCTCGGCTT
CTTCTTCGCAAGCTTTCTAGACCAT
FMO06660.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS15Ab-RA | 724 | CG12324-RA | 138..527 | 18..407 | 1950 | 100 | Plus |
| RpS15Aa-RF | 674 | CG2033-RF | 69..459 | 17..407 | 1850 | 98.2 | Plus |
| RpS15Aa-RE | 741 | CG2033-RE | 136..526 | 17..407 | 1850 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10821813..10822202 | 18..407 | 1950 | 100 | Plus |
| X | 23542271 | X | 13335988..13336378 | 407..17 | 1850 | 98.2 | Minus |
| 2L | 23513712 | 2L | 14747021..14747075 | 407..353 | 245 | 96.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:28:20 has no hits.
FMO06660.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:31:50 Download gff for
FMO06660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS15Ab-RA | 133..527 | 10..407 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-29 11:27:51 Download gff for
FMO06660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS15Ab-RA | 138..532 | 10..407 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:28 Download gff for
FMO06660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS15Ab-RA | 133..527 | 10..407 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:28 Download gff for
FMO06660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10821808..10822202 | 10..407 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:31:50 Download gff for
FMO06660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6709313..6709707 | 10..407 | 98 | | Plus |
