FMO06661.5prime Sequence
560 bp (560 high quality bases) assembled on 2008-10-01
> FMO06661.5prime
CCCTCATCTGCCTGGCCGTCCTGAGCGCCGCCTCCGCCGGAGTCCTCCAC
GGACATGGTGCTGGTCTCTACGCCGCCGCCCCGGCCATCTATGCCGGCCA
TGGTCACCACGACGAGGGAATCGATTACCATGCCTACCCCAAGTACCACT
ACAACTACGGAGTGGCTGACTCTCACACCGGAGACGTGAAGTCGCAGCAC
GAAGTGCGTGATGGTGATGTCGTCAAGGGATCCTACTCTCTGGTGGAGCC
CGATGGTTCGGTGCGCACCGTGGAGTACACCGCCGATGACCACAATGGCT
TCAACGCCGTCGTCCACAAGACCGGCCCCACTGTGCACCACGCCGCTCCC
GCTGTGGTTGCCCACGCCGCTCCCGCCGTGGTCCATGCCGCTCCGGCCTA
TGCCCCAGCCATTGCCCACCATGTGGCCGCCGCTCCCGCCGTGCCCTACG
CCGGATCCCCTGGCGCATCAGGTGCCCGCCTACGGATACGCCACCCACAA
CGCTCACGCGCATGTGGCCCACTACGCAAGCTTTCTAGACCATTCGTTTG
GCGCGCGGGC
FMO06661.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:51:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr62Bc-RB | 1017 | CG1919-RB | 97..620 | 1..525 | 2600 | 99.8 | Plus |
| Cpr62Bc-RA | 1134 | CG1919-RA | 97..620 | 1..525 | 2600 | 99.8 | Plus |
| CG34461-RB | 1873 | CG34461-RB | 306..504 | 132..330 | 455 | 81.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:50:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1840795..1841187 | 525..132 | 1920 | 99.7 | Minus |
| 3L | 28110227 | 3L | 1841760..1841891 | 132..1 | 660 | 100 | Minus |
| 3L | 28110227 | 3L | 8337932..8338104 | 152..324 | 445 | 83.8 | Plus |
| 3L | 28110227 | 3L | 8326842..8326938 | 234..330 | 380 | 92.8 | Plus |
| 3L | 28110227 | 3L | 4211097..4211189 | 287..195 | 210 | 81.7 | Minus |
| 3L | 28110227 | 3L | 4216023..4216075 | 207..259 | 190 | 90.6 | Plus |
| 3L | 28110227 | 3L | 19520076..19520113 | 270..307 | 190 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:51:00 has no hits.
FMO06661.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:56:46 Download gff for
FMO06661.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr62Bc-RA | 97..624 | 1..530 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:31:11 Download gff for
FMO06661.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr62Bc-RA | 93..620 | 1..530 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:20:45 Download gff for
FMO06661.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr62Bc-RA | 97..624 | 1..530 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:20:45 Download gff for
FMO06661.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1840791..1841187 | 132..530 | 99 | <- | Minus |
| 3L | 1841761..1841891 | 1..131 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:56:46 Download gff for
FMO06661.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1840791..1841187 | 132..530 | 99 | <- | Minus |
| arm_3L | 1841761..1841891 | 1..131 | 100 | | Minus |
