FMO06662.5prime Sequence
589 bp (589 high quality bases) assembled on 2008-09-29
> FMO06662.5prime
CTTATCAGTCGACATGGGCCGTTACTCACGCGAGTCAGACAACGTGGCCA
AGTCGTGCAAGGCGCGCGGGCCCAATCTACGTGTGCACTTCAAGAACACA
CATGAGACCGCCCAGGCCATCAAGCGCATGCCCCTGCGCCGTGCCCAGCG
TTACCTGAAGGCCGTCATCGACCAGAAGGAGTGCGTGCCCTTCCGTCGCT
TCAACGGAGGAGTCGGTCGTTGTGCCCAGGCCAAGCAGTGGAAGACCACG
CAGGGTCGCTGGCCCAAGAAGTCCGCCGAGTTCCTGTTGCAGCTGCTGCG
CAACGCCGAGGCCAACGCTGATTGCAAGGGTCTGGATGCCGACCGCCTGG
TCGTCCACCACATTCAGGTGAACCGCGCTCAGTGCCTGCGTCGCCGCACG
TACCGTGCCCATGGTCGCATCAATCCCTACATGTCGTCGCCATGCCACGT
CGAGGTCATCCTCACCGAGAAGGAGGAGCTTGTCTCCAAGGCCACTGATG
ACGAGCCCGCCAAGAAGAAGCTCTCCAAGAAGAAGCTGCAGCGCCAAAAG
GAGAAGATGTTGCGTTCTGAAGCAAGCTTTCTAGACCAT
FMO06662.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:57:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL17-RE | 830 | CG3203-RE | 30..587 | 14..571 | 2775 | 99.8 | Plus |
| RpL17-RA | 837 | CG3203-RA | 37..594 | 14..571 | 2775 | 99.8 | Plus |
| RpL17-RD | 1100 | CG3203-RD | 300..857 | 14..571 | 2775 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:57:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6741780..6742258 | 571..93 | 2380 | 99.8 | Minus |
| X | 23542271 | X | 6743058..6743138 | 94..14 | 405 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:57:48 has no hits.
FMO06662.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:19 Download gff for
FMO06662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL17-RC | 141..701 | 14..575 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-29 11:28:08 Download gff for
FMO06662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL17-RC | 119..679 | 14..575 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:43:09 Download gff for
FMO06662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL17-RD | 300..860 | 14..575 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:43:09 Download gff for
FMO06662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6741776..6742256 | 95..575 | 99 | <- | Minus |
| X | 6743058..6743138 | 14..94 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:19 Download gff for
FMO06662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6635809..6636289 | 95..575 | 99 | <- | Minus |
| arm_X | 6637091..6637171 | 14..94 | 100 | | Minus |
