FMO06663.5prime Sequence
802 bp (802 high quality bases) assembled on 2008-10-01
> FMO06663.5prime
ATTATACGAAGTTATCAGTCGACATGGATACATTTGACGTTTCTGATAGG
AACAGCTGGTACTTTGGTCCCATGTCTAGACAGGATGCTACTGAAGTTTT
GATGAACGAACGCGAGCGGGGAGTGTTTTTAGTCCGTGATAGTAACTCGA
TAGCAGGGGATTATGTACTTTGTGATCAAATCGTTTACCGCATTGGGGAT
CAGTCTTTTGACAATCTACCGAAACTCTTAACTTTTTACACTCTTCATTA
TTTGGATACAACCCCTTTAAAACGGCCTGCGTGTAGAAGGGTGGAAAAAG
TAATAGGAAAGTTCGATTTCGTTGGCAGCGATCAAGATGATTTACCTTTT
CAAAGAGGTGAAGTTTTAACAATAGTTCGAAAAGACGAGGATCAATGGTG
GACTGCGCGTAACTCCTCGGGGAAAATTGGTCAAATACCGGTTCCCTATA
TACAACAGTATGACGATTATATGGATGAAGATGCTATTGATAAAAACGAA
CCTTCCATTTCGGGATCTAGCAATGTATTTGAAAGTACTCTTAAAAGGAC
AGATTTAAATCGAAAACTACCTGCATACGCCCGCGTAAAACAGTCAAGGG
TCCCTAACGCATACGATAAGACTGCATTAAAATTGGAAATAGGTGACATT
ATTAAAGTCACTAAAAACAAACATTAATGGGCAATGGGAGGGAGAATTAA
ATGGAAAAAATGGTCATTTTCCCTTCACGCACGTTGAATTTGTCGATGAT
TGTGATTTAAGCAAAAACTCCACAGAAATATGCGCAAGCTTTTCTAGACC
AT
FMO06663.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Crk-RB | 1143 | CG1587-RB | 232..990 | 24..783 | 3775 | 99.9 | Plus |
| Crk-RE | 1173 | CG1587-RE | 412..1020 | 174..783 | 3025 | 99.8 | Plus |
| Crk-RA | 1197 | CG1587-RA | 436..1044 | 174..783 | 3025 | 99.8 | Plus |
| Crk-RE | 1173 | CG1587-RE | 262..358 | 78..174 | 485 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 212791..213012 | 561..783 | 1065 | 99.6 | Plus |
| 4 | 1348131 | 4 | 211639..211795 | 174..330 | 785 | 100 | Plus |
| 4 | 1348131 | 4 | 211854..211982 | 330..458 | 645 | 100 | Plus |
| 4 | 1348131 | 4 | 210556..210676 | 54..174 | 605 | 100 | Plus |
| 4 | 1348131 | 4 | 212625..212729 | 456..560 | 525 | 100 | Plus |
| 4 | 1348131 | 4 | 216168..216226 | 330..388 | 280 | 98.3 | Plus |
| 4 | 1348131 | 4 | 216051..216111 | 268..328 | 275 | 96.7 | Plus |
| 4 | 1348131 | 4 | 216008..216052 | 174..218 | 195 | 95.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:32:26 has no hits.
FMO06663.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:45:59 Download gff for
FMO06663.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Crk-RB | 229..993 | 21..787 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:31:07 Download gff for
FMO06663.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Crk-RB | 111..875 | 21..787 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:49 Download gff for
FMO06663.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Crk-RB | 229..993 | 21..787 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:49 Download gff for
FMO06663.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 210452..210486 | 21..55 | 97 | -> | Plus |
| 4 | 210558..210675 | 56..173 | 100 | -> | Plus |
| 4 | 211639..211794 | 174..329 | 100 | -> | Plus |
| 4 | 211854..211982 | 330..458 | 100 | -> | Plus |
| 4 | 212628..212729 | 459..560 | 100 | -> | Plus |
| 4 | 212791..213015 | 561..788 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:45:59 Download gff for
FMO06663.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 232480..232608 | 330..458 | 100 | -> | Plus |
| arm_4 | 233254..233355 | 459..560 | 100 | -> | Plus |
| arm_4 | 231078..231112 | 21..55 | 97 | -> | Plus |
| arm_4 | 231184..231301 | 56..173 | 100 | -> | Plus |
| arm_4 | 232265..232420 | 174..329 | 100 | -> | Plus |
| arm_4 | 233417..233641 | 561..788 | 98 | -> | Plus |
