FMO06664.5prime Sequence
1055 bp (769 high quality bases) assembled on 2008-09-29
> FMO06664.5prime
CTTTTACGACGTTATCAGTCGACATGGTGGAATTCCGCTTCGATATTAAG
CCGCTGTTCGCGCAGCCAATCATCAAGGTGACATCCAATCTCCTGCCGAA
CACCTTTCGCGGCGATCGGCGTCAGTGTTTAGATGCCACCAGCAAAATGA
CCGAGATCATTGACCAGCTGGGCCAGCTGTCGGCCACCTCGCAGGGACTC
AGCAAACCGGTGACAACGGCCCAGCGCCTGAGGATGTCCGACAATCAGAC
CATCTATCTGCTGGCAGATAATGAGGCGGGTCACAATGGCGCCGTCTTAG
GTCTGTTGAAGGTGGGCACCAAGAATCTCTATTTATTCGACGAAGCCGGA
AAGACGCGCATGGTGGAGCAGACTCCATCCATTCTGGACTTCTATGTCCA
CGAGTCTCGTCAGCGTGCCGGACTGGGCAAGCGTCTCTTCCAAACGATGC
TCAACGAAGAGCAGTGGACCGCACGCAAGTGCTCGGTGGATCGGCCGTCG
GAAAAGCTACTGTCCTTCCTTAGCAAGCATTACGGATTAAAGCGAATCAT
TCCGCAAGCGAACAATTTCGTGCTCTACGAGGGACTCTTTAACGATGGGG
AATCGGGGAATGGAGGTGGTAACGGTCATGCTAACGGCACCCCGAATGGC
CTGCACATCACAAACAGTCCTAACACACACCTCTTTGGCGCTACTTACCT
GGGCGAGGATTCTACCAGCGACGTGGTTCGCAGCAGCAGACAACACCGAA
TGCACGACTGCAGCAGATAACACAGATCTCTCCGTCCGGACGATATGGGG
CTAAACGTCCCCACCTGCAGCATGCCGAGATATTCATGCCGGCACTCGAG
GGCGGATATGAGAATGGCAGTGCAAAGCTAACAGTGGCATGTTATCACTA
TTTTTCTATATATTGCTATGCTACTTGCTGCTCCTGAGCCTGTCGACTGA
AGCAACGCTTATGAACCGGAGCTGAAGTTGAACCGGATCATGCCTGAGTC
CGAACCCAAACCGAACCGAAGTGATTACCCCATCACTCCCGCCGCAGAGC
CACTT
FMO06664.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3967-RA | 2238 | CG3967-RA | 203..1249 | 24..1053 | 4185 | 94.7 | Plus |
| CG3967-RE | 2142 | CG3967-RE | 107..1153 | 24..1053 | 4185 | 94.7 | Plus |
| CG3967-RD | 2196 | CG3967-RD | 161..1207 | 24..1053 | 4185 | 94.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9418344..9418724 | 667..287 | 1890 | 99.7 | Minus |
| 3L | 28110227 | 3L | 9418844..9418999 | 286..131 | 780 | 100 | Minus |
| 3L | 28110227 | 3L | 9417658..9417819 | 824..663 | 715 | 98.8 | Minus |
| 3L | 28110227 | 3L | 9419095..9419201 | 130..24 | 535 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:31:34 has no hits.
FMO06664.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:45:26 Download gff for
FMO06664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3967-RD | 154..1048 | 16..904 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-29 11:28:13 Download gff for
FMO06664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3967-RE | 100..994 | 16..904 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:23 Download gff for
FMO06664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3967-RD | 154..1048 | 16..904 | 97 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:23 Download gff for
FMO06664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9417652..9417814 | 668..829 | 98 | <- | Minus |
| 3L | 9418344..9418724 | 287..667 | 99 | <- | Minus |
| 3L | 9418844..9418999 | 131..286 | 100 | <- | Minus |
| 3L | 9419095..9419205 | 16..130 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:45:26 Download gff for
FMO06664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9410752..9410914 | 668..829 | 98 | <- | Minus |
| arm_3L | 9411444..9411824 | 287..667 | 99 | <- | Minus |
| arm_3L | 9411944..9412099 | 131..286 | 100 | <- | Minus |
| arm_3L | 9412195..9412305 | 16..130 | 96 | | Minus |
