FMO06666.5prime Sequence
915 bp (-75 high quality bases) assembled on 2008-10-01
> FMO06666.5prime
ATAAAGCCAACTTATCAGTCGACATGCTTAAGCTACGTAATCCTTTGGCC
GTCGGCAAAAGCAACAACAACGCTGTCCGCTCTCTGTCCACCACTCCGAG
CCGCAACGATTCAGAATCATGGTTCTCAAAACTGCTCGTTCGGAAAATAG
AACCAACCAAGGAGTCGCACAGTCGAATGCTCAGCGATAAGGAAATCATA
TATGCCCTTCATACCCACAACGTCAGGCCCGATTCCATGGGCAGCTACTT
AAATAACTACAAAACTACTGTCGCTTTGATCAACGAGAAGAAGGCAAACC
TTTCCTGCGAATTGGTGGCATCATGGACGGTTCAAGTGGGCGACATGGAT
CAGTGCCTGCACCTGTGGAAGTACACAGGAGGCTTCAAGAAGATAGATCA
GGCCAAAGAAGACCTTTGGAACGATCCCGAGTATCTTAGCTTGATGCAGG
AGCGTTCCAAGTTCTTGCGCTCCCGTCATCTGCAATATCTCTTGGCATTC
AGCTACTGGCCGCAAATTGCCAGTCGTACCGGCAAGAACATTTACGAAAT
GCGCTCATACCGACTGACACCTGGCACCATGATTGAGTGGGGAAACAACT
GGGCCCGCGCCATCAACTATCGCAAGCACAACAACGAAGCATTCGCCGGA
TTCTTCTCGCAGATCGGAAGACTGTACAATGTTCATCACATTTTGGTGTT
ACAAATCTCTGCAAGACCGTAAGGAGACCCGGGAAGCAGCCTGGCGATCC
CCCGGATGGGATGAGTGTGTGGCCTACACGGTGCCATTAATCCCGCGAGA
TGCACTGCCGTGTCCTGGCGCCCACTGAAGTCCTCGCCCTCACAAGCAAG
CTTTTCTAGAACATTCCGTTGGCGCGCCGGCCCAGGTAGTGGGTCATAAT
CATTATCTAATCATA
FMO06666.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:37:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nipsnap-RF | 1377 | CG9212-RF | 201..1019 | 24..845 | 3975 | 99.1 | Plus |
| Nipsnap-RC | 1283 | CG9212-RC | 107..925 | 24..845 | 3975 | 99.1 | Plus |
| Nipsnap-RA | 1402 | CG9212-RA | 226..1044 | 24..845 | 3975 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:37:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16071238..16071531 | 553..260 | 1455 | 99.7 | Minus |
| X | 23542271 | X | 16071721..16071901 | 259..79 | 905 | 100 | Minus |
| X | 23542271 | X | 16071038..16071178 | 693..553 | 705 | 100 | Minus |
| X | 23542271 | X | 16070723..16070868 | 845..698 | 625 | 98 | Minus |
| X | 23542271 | X | 16073027..16073082 | 79..24 | 250 | 96.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:37:50 has no hits.
FMO06666.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:33:50 Download gff for
FMO06666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nipsnap-RC | 96..930 | 14..853 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:31:02 Download gff for
FMO06666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nipsnap-RC | 94..928 | 14..853 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:36:08 Download gff for
FMO06666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nipsnap-RA | 215..1049 | 14..853 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:36:08 Download gff for
FMO06666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16071721..16071900 | 80..259 | 100 | <- | Minus |
| X | 16073027..16073093 | 14..79 | 91 | | Minus |
| X | 16070718..16070868 | 698..853 | 95 | <- | Minus |
| X | 16071035..16071177 | 554..697 | 99 | <- | Minus |
| X | 16071238..16071531 | 260..553 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:33:50 Download gff for
FMO06666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15964751..15964901 | 698..853 | 95 | <- | Minus |
| arm_X | 15965068..15965210 | 554..697 | 99 | <- | Minus |
| arm_X | 15965271..15965564 | 260..553 | 99 | <- | Minus |
| arm_X | 15965754..15965933 | 80..259 | 100 | <- | Minus |
| arm_X | 15967060..15967126 | 14..79 | 91 | | Minus |
