Clone FMO06667 Report

Search the DGRC for FMO06667

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:66
Well:67
Vector:pMK33-CFH-BD
Associated Gene/TranscriptRpb8-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO06667.5prime Sequence

442 bp (442 high quality bases) assembled on 2008-10-01

> FMO06667.5prime
CATCTTCAACGTAAAGGACATGGATCCGGAGGGCAAAAAGTTCGACCGTG
TATCCCGCCTGCACTGCGAGTCCGAGTCGTTTAAGATGGACCTCATCCTG
GACATCAACTCGTGGCTATACCCCATGGAGCTGGGCGACAAGTTCCGCCT
GGTTTTGGCCACCACCCTGCGCGAGGATGGTTGCCCGGACAGCGGGGAGT
ACAATCCAATGGAGCACGAGGGAACGCGGGCGGACAGCTTTGAGTACGTG
ATGTACGGCAAGATCTACAGGATCGAGGGCGACGAAGCACACAATGAGGC
CTCCCGGCTCTCCGCCTACGTGTCATTCGGCGGCTTGCTGATGCGACTTC
AGGGTGACGCCAACAATCTTCATGGCTTCGAGGTGGACCAGCACATGTAC
CTGCTGATGAAGCGGCTGGCCTTCGCAAGCTTTCTAGACCAT

FMO06667.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:10:05
Subject Length Description Subject Range Query Range Score Percent Strand
Rpb8-RA 692 CG11246-RA 214..637 1..424 2120 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:10:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21729216..21729639 1..424 2120 100 Plus
Blast to na_te.dros performed on 2014-11-28 19:10:04 has no hits.

FMO06667.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:16 Download gff for FMO06667.5prime
Subject Subject Range Query Range Percent Splice Strand
Rpb8-RA 214..648 1..436 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:30:57 Download gff for FMO06667.5prime
Subject Subject Range Query Range Percent Splice Strand
Rpb8-RA 202..636 1..436 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:01:38 Download gff for FMO06667.5prime
Subject Subject Range Query Range Percent Splice Strand
Rpb8-RA 214..648 1..436 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:01:38 Download gff for FMO06667.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 21729216..21729635 1..420 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:16 Download gff for FMO06667.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21722316..21722735 1..420 100 <- Plus