FMO06669.5prime Sequence
785 bp (785 high quality bases) assembled on 2008-09-29
> FMO06669.5prime
CAGTCGACATGATTTCGCTGCTGCAAATGAAATTCCGTGCGCTTTTGTTG
TTGCTATCAAAAGTATGGACATGCATTTGTTTCATGTTCAATCGCCAAGT
GCGAGCTTTTATCCAGTATCAACCGGTTAAATACGAACTCTTCCCGTTGT
CACCCGTCTCGCGGCACCGCCTGAGCCTGGTGCAGCGCAAGACCCTCGTT
CTGGACCTGGACGAAACGCTAATCCACTCCCATCACAATGCGATGCCCCG
GAATACGGTGAAGCCGGGCACGCCGCACGATTTCACTGTCAAAGTGACCA
TCGATCGGAATCCAGTGCGCTTTTTCGTGCACAAGCGACCGCATGTGGAC
TACTTCCTGGACGTGGTCTCGCAGTGGTACGATCTGGTGGTCTTCACGGC
CAGCATGGAGATTTACGGAGCGGCGGTGGCAGACAAGCTGGACAACGGAC
GAAACATTCTCCGGAGGCGATACTACAGACAGCACTGCACGCCCGACTAC
GGATCCTACACCAAAGACCTGTCGGCCATCTGCAGTGACCTAAATAGGAT
ATTTATCATCGACAATTCGCCCGGCGCCTATCGCTGTTTTCCCAACAACG
CCATACCCATCAAGAGTTGGTTCTCGGACCCCGATGGACACGGCGCTGCT
GTCGCTGCTGCCCATGCTGGATGCGCTGAGGTTCACGAACGACGTGAGAT
CGGTGCTGTCGAGGAACTTGCACCTGCACCCGCCTCTGGGCAAGCTTTCT
AAACCATTCGTTTGGCGCCCCGGGCCCAGGTAAAT
FMO06669.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:06:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dd-RA | 3043 | CG1696-RA | 781..1509 | 9..739 | 3590 | 99.6 | Plus |
| Dd-RB | 3034 | CG1696-RB | 781..1500 | 9..739 | 3445 | 98.4 | Plus |
| Dd-RC | 2860 | CG1696-RC | 781..1137 | 9..365 | 1785 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:06:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 21321903..21322162 | 367..108 | 1300 | 100 | Minus |
| X | 23542271 | X | 21321637..21321820 | 548..365 | 905 | 99.5 | Minus |
| X | 23542271 | X | 21321333..21321514 | 730..548 | 865 | 99.5 | Minus |
| X | 23542271 | X | 21323131..21323229 | 107..9 | 495 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:06:37 has no hits.
FMO06669.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:16:29 Download gff for
FMO06669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dd-RA | 777..1513 | 4..745 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-29 11:28:22 Download gff for
FMO06669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0269-RA | 801..1537 | 4..745 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:50:15 Download gff for
FMO06669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dd-RA | 777..1513 | 4..745 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:50:15 Download gff for
FMO06669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 21321905..21322162 | 108..365 | 100 | <- | Minus |
| X | 21323131..21323233 | 4..107 | 98 | | Minus |
| X | 21321319..21321513 | 549..744 | 97 | <- | Minus |
| X | 21321637..21321819 | 366..548 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:16:29 Download gff for
FMO06669.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 21192932..21193189 | 108..365 | 100 | <- | Minus |
| arm_X | 21192346..21192540 | 549..744 | 97 | <- | Minus |
| arm_X | 21192664..21192846 | 366..548 | 99 | <- | Minus |
| arm_X | 21194158..21194260 | 4..107 | 98 | | Minus |
