FMO06670.5prime Sequence
1130 bp (-74 high quality bases) assembled on 2008-10-01
> FMO06670.5prime
ATAAAACGAAGTTATCAGTCGACATGGCAACCGGCGTCATCCATAGTAGC
GTTGTCTCCACCTCCGCCGGACGCCAGAATATCTGCGACTGCCTGGAACA
GGAGTCCGCCGGATTGGTCAAGGCCCTGCCCAAATCCAAGTCGGCCGATC
AGCTCTCGGAACTCACCTGCGCCTGCCTGCGCTGCCAGTACCTGGCCACG
GATCTTCAGCATCCGAACACCCAGTCCGGTCACCTGCCCGTGGAGCACAG
ACACCGACCCGTGAGCTCAGGCTCCGGTTCACTGGGCGCCCTCAGCGCCA
AGGAGTCGCCCATCTTCGTGCGCCGCCAGATCTGTTTCCCGTCCGCGGAG
ACCCAGCTGCATCCGCCGCTCAGCTCCTCCCAGTTCTCGCTGCGAAGTGC
TTCTCCGGCCTACGCCGAGCCCAAGCCGGAGTTGGATCTCGGCGCCATAG
AGGCGCTGCAACTGACCACGGTCATGCCCGCGGGAGTCAACCGTAACCAC
ATGGACATCAACAGGAACAACGGATACCTGCACAACGGAGCCATCATGAC
ATCCACCAGCGATAAGCGCGAGCATCTGTACAAGATTCTAGTCATTGGTG
AACTGGGCACCGGCAAGACGTCCTTCATTAAGCGCTATGTGCACCAGTTC
TTCAGCCAGAACTACAGGGCCACCATCGGCGTGGACTTCGCCCTGAAAGT
GCTGCAGTGGGACGCCAATACGATAGTGCGCCTCTCAGCTGTGTGGATAT
CGCCGGGTCAGGAGAGGTTTGCAACATGACCCGTGTCTACTACAAGGAGG
CGGTGGGCGCGTTCATCGTTTTTGATGTGACTCGCAGTGGGACTTTCGAT
TGCGTGAGCAAGTGGAAGGAAGATCTAGACTCCAAGTGCAGCTGCCGGAC
GGCAGTCTCTTTCCGTGCATCCTGCTGGGCCATAAAATGCGATCAGGAAA
AGCTGGCCTTCATAACGCATCCCGAGATATGGATGATTATGTTGATGGAG
AACGGATTGCGGTTGGTTTGAAACTTCGCCATGGAAATATCACTTCGATG
AGGCAGCTCGGCCTCGGGATAAGAAACTCATCAACGAATAGCTTGATTTC
TGCGGATTCTGGCCCAATGGCCACAGTTCC
FMO06670.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:25:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ltd-RC | 2347 | CG8024-RC | 610..1705 | 23..1114 | 4720 | 96.3 | Plus |
| ltd-RE | 2156 | CG8024-RE | 419..1514 | 23..1114 | 4720 | 96.3 | Plus |
| ltd-RD | 1448 | CG8024-RD | 227..806 | 539..1114 | 2155 | 93.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:25:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9185216..9185733 | 540..23 | 2575 | 99.8 | Minus |
| 2R | 25286936 | 2R | 9178830..9179225 | 936..540 | 1685 | 97.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:25:47 has no hits.
FMO06670.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:56 Download gff for
FMO06670.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ltd-RE | 415..1495 | 18..1093 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:31:17 Download gff for
FMO06670.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ltd-RC | 625..1705 | 18..1093 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:01:19 Download gff for
FMO06670.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ltd-RE | 415..1495 | 18..1093 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:01:19 Download gff for
FMO06670.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9178830..9179225 | 540..936 | 97 | <- | Minus |
| 2R | 9185217..9185737 | 18..539 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:56 Download gff for
FMO06670.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5066335..5066730 | 540..936 | 97 | <- | Minus |
| arm_2R | 5072722..5073242 | 18..539 | 99 | | Minus |
