FMO06672.5prime Sequence
1162 bp (-72 high quality bases) assembled on 2008-10-01
> FMO06672.5prime
AAAAAAAAAGTTATCAGTCGACATGCACCTGCCGCAACAGACATCGCACC
ACGACATCGCTGCGATGTTCGCGGAAGCACAATCGGATTTCGTGCGGGTC
AGCGCTCCAATGGTGCGCTATAGTAAGCTGGAATTTCGGCGTCTAGTACG
ACTGAATGGAGTACAACTCGCGTTTACGCCCATGATGATCTCAGACTCCA
TTAACAACAGCGAAAAGGCCCGCCAGAACGAGTTCTCCACGGGTGCGGAT
GACCAGCCGCTGATCGCTCAGTTTGCGGCCAAGGATCCTACGGAATTCGT
CACCTCCGCCCAGCTCATCTACCCATATGTCGATGGCATCGATCTAAATT
GCGGATGTCCACAAAGCTGGGCAATGGCGAAAGGTTACGGTTGCGGAATG
CTGCGCCAGCCGGAGCTAGTGCATCAAGTGGTTCAGGAGGTGAGGCGCAC
ACTGCCCGGGGATTTCAGTGTCTCGGTGAAGATGCGTCTGCTGGGAGGAG
AGGAGTCCTTGCAGCGCACTATCGATTTAGCCCGTCAGTTGGAGAGCGCG
GGCGTCACCTTTCTAACTCTTCACGGTCGGACGCCAGCCCAAAAACACTC
TAAGGACACGCTAGACATCCCAGCCATGTCTCAGGTGCGCCAATCCCTGC
AGATCCCCCTGATAGTCAACGGCAATGTGGAGAGCTATAGGGATGCTTGC
GATATGCATGAACAGACGGGAGCAGCTGGTGTAATGGCTGCTCGAGGCTT
GCTTGCTAATCCGGCTCTCTTCAATAGCACTATCCAGATGGTAAAACAAC
GCCACTGTCCTGTGTACAACAGTGGCTAGATATAGCCTCTGCTTGCCGGG
GATAACCTGCTTTTCAGTGCTTCACCACCACCTCACCTTTATGTTATAGC
GCCTCAAATGAAGCCGAGATCTTCGAGTGCAATTCAACAGTTTGGGTTCC
AAAAGAACAGGTCGTGGAACTCCCTGAAGGAGCACTACAATCTGGAATAT
AGTGAAGATTGACCCTCATCGCTGACTACCGGATTGCACGTTACCCCACT
TCACACGCCCAAGCTCGCCCGGCAATCCGCCGCCGAGTCGGATAACAGCC
TGGGAGTTCGAAAGCGGAGGAAATTTCTTTAGGATTCCAAGACAATCAAC
TGACACGGAACT
FMO06672.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10495-RA | 1371 | CG10495-RA | 87..1198 | 22..1131 | 4925 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19063531..19064513 | 111..1093 | 4120 | 97.3 | Plus |
| 2L | 23513712 | 2L | 19063381..19063469 | 22..110 | 415 | 97.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:56:47 has no hits.
FMO06672.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:19:54 Download gff for
FMO06672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10495-RA | 87..1183 | 22..1116 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:31:15 Download gff for
FMO06672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10495-RA | 57..1153 | 22..1116 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:43:53 Download gff for
FMO06672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10495-RA | 87..1183 | 22..1116 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:43:53 Download gff for
FMO06672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19063381..19063469 | 19..110 | 94 | -> | Plus |
| 2L | 19063531..19064538 | 111..1116 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:19:54 Download gff for
FMO06672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19063381..19063469 | 19..110 | 94 | -> | Plus |
| arm_2L | 19063531..19064538 | 111..1116 | 97 | | Plus |
