FMO06673.5prime Sequence
920 bp (800 high quality bases) assembled on 2008-10-01
> FMO06673.5prime
CAGTCGACATGGATTCACCTACACCGCCAATTGTCATCGAAGATTCAAAC
GGATCAGCAATGGACGCCTGTTTCACGGCATTCGACAAGGACAGTGATGA
CCGCCTGAGTCTTGCCGAATTTTCGATAATCTGTCGAGCTCTGTTCCGCA
ACGACAAGGGACACATCTACGATGTGCCCCCCGAGCGCCTTGAGCAGATA
TTCGCCGTCTTCGATACGAATGGCGATGGCTTCATCGACCGGGAGGAGTT
TAAATTCTGTTGGAACCAGTGGATAAAAACGATTGTGCGACCGGTGAACG
CGTTCCTCATTGTTGATGTACAAAATGATTTTATAAGTGGTTCCTTGGAT
ATAAGTAATTGCAGTGCACAGCAGCAAGGACACGAGATACTGGAGCCCAT
CAACAAGCTGCTGGATACGGTGGACTTTGATGCCGTCTTCTACTCATTGG
ACTGGCATCCCAGCGATCACGTTTCATTTATTGATAATGTCAAAATGCGC
CCCATGGACGAGTCCTCCGCGTTGGACTCGGATTCCGCCAAGGTGTTTGA
CACGGTCATTTTCGCAGGACCGCCGCCGATGAAGCAGCGCCTGTGGCCAC
GTCACTGCGTCCAGTACTCGTGGGGGAGCCGAGCTGCACAAGGACCTCAA
AGTGGTCGACCACGGCATCAAGGTGTACAAGGGCACTAATCCCGAGGTGG
ACTCTTATTCGGTGTTCTGGACAACAAGGAGCTTATCTGACACCACTCTA
AATGCCCAGCTGAAAATGAAGGGCGCCCCGGATATCTATGTGTGCGGATT
GGTCTATGACTTCTGCGTTGGAGCACAGCCTGGGATGCTTTGTTCGGCCG
ATACAGGACATCCTCACCACTAACTGCTGCCGGGGTACAAATGTCACCAC
ATCCAAGCACCCAATAGAGA
FMO06673.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:50:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Naam-RB | 1790 | CG31216-RB | 158..1054 | 9..903 | 4090 | 97.6 | Plus |
Naam-RA | 1817 | CG31216-RA | 377..1273 | 9..903 | 4090 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:50:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19697525..19697900 | 521..895 | 1400 | 94.4 | Plus |
3R | 32079331 | 3R | 19688176..19688365 | 92..281 | 950 | 100 | Plus |
3R | 32079331 | 3R | 19697310..19697446 | 385..521 | 685 | 100 | Plus |
3R | 32079331 | 3R | 19696551..19696656 | 281..386 | 530 | 100 | Plus |
3R | 32079331 | 3R | 19687212..19687297 | 9..94 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:50:51 has no hits.
FMO06673.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:56:40 Download gff for
FMO06673.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Naam-RA | 370..1279 | 1..910 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:21:28 Download gff for
FMO06673.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31216-RA | 359..1268 | 1..910 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:20:40 Download gff for
FMO06673.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Naam-RA | 370..1279 | 1..910 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:20:40 Download gff for
FMO06673.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19688179..19688365 | 95..281 | 100 | -> | Plus |
3R | 19696552..19696656 | 282..386 | 100 | -> | Plus |
3R | 19697312..19697446 | 387..521 | 100 | -> | Plus |
3R | 19687205..19687297 | 1..94 | 95 | -> | Plus |
3R | 19697526..19697915 | 522..910 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:56:40 Download gff for
FMO06673.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15522274..15522378 | 282..386 | 100 | -> | Plus |
arm_3R | 15523034..15523168 | 387..521 | 100 | -> | Plus |
arm_3R | 15513901..15514087 | 95..281 | 100 | -> | Plus |
arm_3R | 15512927..15513019 | 1..94 | 95 | -> | Plus |
arm_3R | 15523248..15523637 | 522..910 | 93 | | Plus |