Clone FMO06673 Report

Search the DGRC for FMO06673

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:66
Well:73
Vector:pMK33-CFH-BD
Associated Gene/TranscriptNaam-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO06673.5prime Sequence

920 bp (800 high quality bases) assembled on 2008-10-01

> FMO06673.5prime
CAGTCGACATGGATTCACCTACACCGCCAATTGTCATCGAAGATTCAAAC
GGATCAGCAATGGACGCCTGTTTCACGGCATTCGACAAGGACAGTGATGA
CCGCCTGAGTCTTGCCGAATTTTCGATAATCTGTCGAGCTCTGTTCCGCA
ACGACAAGGGACACATCTACGATGTGCCCCCCGAGCGCCTTGAGCAGATA
TTCGCCGTCTTCGATACGAATGGCGATGGCTTCATCGACCGGGAGGAGTT
TAAATTCTGTTGGAACCAGTGGATAAAAACGATTGTGCGACCGGTGAACG
CGTTCCTCATTGTTGATGTACAAAATGATTTTATAAGTGGTTCCTTGGAT
ATAAGTAATTGCAGTGCACAGCAGCAAGGACACGAGATACTGGAGCCCAT
CAACAAGCTGCTGGATACGGTGGACTTTGATGCCGTCTTCTACTCATTGG
ACTGGCATCCCAGCGATCACGTTTCATTTATTGATAATGTCAAAATGCGC
CCCATGGACGAGTCCTCCGCGTTGGACTCGGATTCCGCCAAGGTGTTTGA
CACGGTCATTTTCGCAGGACCGCCGCCGATGAAGCAGCGCCTGTGGCCAC
GTCACTGCGTCCAGTACTCGTGGGGGAGCCGAGCTGCACAAGGACCTCAA
AGTGGTCGACCACGGCATCAAGGTGTACAAGGGCACTAATCCCGAGGTGG
ACTCTTATTCGGTGTTCTGGACAACAAGGAGCTTATCTGACACCACTCTA
AATGCCCAGCTGAAAATGAAGGGCGCCCCGGATATCTATGTGTGCGGATT
GGTCTATGACTTCTGCGTTGGAGCACAGCCTGGGATGCTTTGTTCGGCCG
ATACAGGACATCCTCACCACTAACTGCTGCCGGGGTACAAATGTCACCAC
ATCCAAGCACCCAATAGAGA

FMO06673.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:50:52
Subject Length Description Subject Range Query Range Score Percent Strand
Naam-RB 1790 CG31216-RB 158..1054 9..903 4090 97.6 Plus
Naam-RA 1817 CG31216-RA 377..1273 9..903 4090 97.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:50:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19697525..19697900 521..895 1400 94.4 Plus
3R 32079331 3R 19688176..19688365 92..281 950 100 Plus
3R 32079331 3R 19697310..19697446 385..521 685 100 Plus
3R 32079331 3R 19696551..19696656 281..386 530 100 Plus
3R 32079331 3R 19687212..19687297 9..94 430 100 Plus
Blast to na_te.dros performed on 2014-11-28 20:50:51 has no hits.

FMO06673.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:56:40 Download gff for FMO06673.5prime
Subject Subject Range Query Range Percent Splice Strand
Naam-RA 370..1279 1..910 96   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:21:28 Download gff for FMO06673.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31216-RA 359..1268 1..910 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:20:40 Download gff for FMO06673.5prime
Subject Subject Range Query Range Percent Splice Strand
Naam-RA 370..1279 1..910 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:20:40 Download gff for FMO06673.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 19688179..19688365 95..281 100 -> Plus
3R 19696552..19696656 282..386 100 -> Plus
3R 19697312..19697446 387..521 100 -> Plus
3R 19687205..19687297 1..94 95 -> Plus
3R 19697526..19697915 522..910 93   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:56:40 Download gff for FMO06673.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15522274..15522378 282..386 100 -> Plus
arm_3R 15523034..15523168 387..521 100 -> Plus
arm_3R 15513901..15514087 95..281 100 -> Plus
arm_3R 15512927..15513019 1..94 95 -> Plus
arm_3R 15523248..15523637 522..910 93   Plus