FMO06677.5prime Sequence
706 bp (702 high quality bases) assembled on 2008-10-01
> FMO06677.5prime
TATTAAAAGGTTCCCACCCAATACAGGGCGACTGCCAAGATTTTGAAGGC
GGCACTGGAGCAGCAGAAGTGCATCAAGACCCTAATATTTGCAGAGAAGC
ATGCCCGTACACGCTCTTTGCATACGGTTCTGAAAAAATTTAGCGAAAAT
CGTGTGGCACTGGAAAAGGCCATCGAAGAGACAGGACTGCTCAGGGACAA
TCCCAGTTTTGATCCCAGTTTGGCCAAGATTCTAGTCACCGAACTGCTGT
TTGGCAGGAAGGAGCTGAACGGCGAAAGCAAACCCGTGCAAACGGTGCGA
AGTTACAAGGATCGACTGCTAAATTCCATCAGAGATTTCGGTGTCCAGCG
AAAAGAACCCAATCCTCGATATGTGCGCATCAACACAAATCTATACAGCT
TGGCGGAGGCCTTGGACTACCTGCATAAAAGCGACTGGCGGCGCAAGGAG
CTGCCTGCGGACGCCAGCTATGCGGATTTTCTGACTGCCATCAAATCGCT
GGCGGAGAACGAGTTCATGACCGATCTGCACGTTGAGGGTGTGCTCATTT
TTCCTGCCAAGTGGTCCAACTACTGGGTCCGCCATCCGTTGGTGCACAGC
AAGAGGTTTATACTGCAGAAACAAGGCCACCTGTTTGGCCGCCCAACTAC
TTGCTCCGCCGTCTGGGGCCACTGTGCTGGATATGTGCGCACTCCCGGTA
TGAAGC
FMO06677.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42358-RA | 1498 | CG42358-RA | 86..785 | 6..705 | 3425 | 99.4 | Plus |
| CG42359-RA | 966 | CG5558-RB | 86..435 | 6..355 | 1735 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19160875..19161226 | 705..354 | 1650 | 99.2 | Minus |
| 3R | 32079331 | 3R | 19161790..19162039 | 355..106 | 1250 | 100 | Minus |
| 3R | 32079331 | 3R | 19162116..19162215 | 105..6 | 485 | 99 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:56:40 has no hits.
FMO06677.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:19:49 Download gff for
FMO06677.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42358-RA | 83..785 | 1..706 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:29:26 Download gff for
FMO06677.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5558-RA | 61..763 | 1..706 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:43:48 Download gff for
FMO06677.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42358-RA | 83..785 | 1..706 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:43:48 Download gff for
FMO06677.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19160873..19161224 | 356..706 | 98 | <- | Minus |
| 3R | 19161790..19162039 | 106..355 | 100 | <- | Minus |
| 3R | 19162116..19162217 | 1..105 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:19:49 Download gff for
FMO06677.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14986595..14986946 | 356..706 | 98 | <- | Minus |
| arm_3R | 14987512..14987761 | 106..355 | 100 | <- | Minus |
| arm_3R | 14987838..14987939 | 1..105 | 97 | | Minus |
