FMO06678.5prime Sequence
1152 bp (998 high quality bases) assembled on 2008-10-01
> FMO06678.5prime
ATAAAAAAAAGTTATCAGTCGACATGCCGTCCAGAAATATTGACGATGCC
GCCGGCGCCAAGGAGGTTCACCGAAGTACAAGGAATTCACTGATCGGCCC
GAAGAGCAAGCGAATCGCCCTAAACAGTCGCAATCGCAGTCTTGCTGCCG
CCGAAAAGAAAACTCAGTCGCAGCTGTCATTCCCGCCAAAATCGGAGTAC
GAGAAGTTCTACGAGACCGTCTTCCTGGCGGAGGATTTGCAGCCGGAGGA
AAATATAACACCAGAACGTCGTAAGCCAGGACCGCGCATGAAGAGCTCAC
TCCAAGCCCTGTTGAGCGATGAAGGATCACCGACGGGACCACAGCGAACC
GCCAAGATAAACGTTGCACAGAAAATGGTCGTTGAGCCAGCGATCCGAGC
CAATGGCATCTCGCCATTGCCCAAGAATGTTGGCAAGGAGGAAAAGTTTG
AGGACTACTATACGAAAACGGAGCGACACGTTTGGAAAAAGGATGCGGAG
AAGATGTTGCTGCAACTGTGGGCACAGCATTTGAAGGATTTTCGTGGAGA
GTCCAAGAATGTGATCATCTACCGGCAAATGGCTAGGGAGATGAGTCAGT
TTGGGCCCAGCCACACGGAGCTTAAAACCAAAATGGACAATTTGTCGCGA
AAGTATAGAATAGAAGCTGAGAGAGTTCGGGAAACTGGAGTGCCATCCAA
GTGGGAGCACTTTCATAAGCTTCAAGCACTTCTGATTGGCACGAAATCAG
TTGATGTCTTCGAAGATATTACCGCCGAAAATCCAGCTCAAGCTTTGTTC
AGCGATGAGGATTATGAGCCTGAGGAATTGTCTTCATTAAAAGACGAGCC
TATGGGCCGGGGACGATGGGAACGTATTCGAAAGTGATAATGGTTGCTAG
CAAAGCCATGAAAAGAACGCGAACTCCCTCTCCAGTATTCCGGAAATCCC
GGAAGAGACGAGGAGGAGAGAGGAGAGAAGATGATGACCACATGAAGGAT
TCCTCCCCCATCGCAATTCAAATGTCGACAAACGGAAAGCATCGACAACC
ATCCGAAAGGATCTGAATAAAGAAGAAAACCTGTGAGTGAGCGAAAAGCT
GCAGTATGAGATGCCCTGCTGACTAGCATTCCCAAGAAAATGTGTTATTG
CT
FMO06678.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:51:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(3)j2D3-RA | 1513 | CG6801-RA | 132..1169 | 24..1052 | 4785 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:51:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12116764..12117170 | 252..658 | 2035 | 100 | Plus |
| 3L | 28110227 | 3L | 12116232..12116459 | 24..251 | 1140 | 100 | Plus |
| 3L | 28110227 | 3L | 12117434..12117662 | 784..1008 | 750 | 94.4 | Plus |
| 3L | 28110227 | 3L | 12117242..12117371 | 657..786 | 650 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:51:02 has no hits.
FMO06678.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:54 Download gff for
FMO06678.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)j2D3-RA | 132..1250 | 24..1121 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:29:23 Download gff for
FMO06678.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)j2D3-RA | 97..1215 | 24..1121 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:20:53 Download gff for
FMO06678.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)j2D3-RA | 132..1250 | 24..1121 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:20:53 Download gff for
FMO06678.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12116232..12116459 | 24..251 | 100 | -> | Plus |
| 3L | 12116764..12117170 | 252..658 | 100 | -> | Plus |
| 3L | 12117244..12117371 | 659..786 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:54 Download gff for
FMO06678.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12109332..12109559 | 24..251 | 100 | -> | Plus |
| arm_3L | 12109864..12110270 | 252..658 | 100 | -> | Plus |
| arm_3L | 12110344..12110471 | 659..786 | 100 | -> | Plus |
