FMO06679.5prime Sequence
771 bp (771 high quality bases) assembled on 2008-10-01
> FMO06679.5prime
AAAAAACAAGGTTATCAGTCGACATGCCCGAATTGTGGCTGGCGCTCAGT
AAACTGTATCGCGATCGCCAGCTGAAGCTCGAATCCTATAGCCGATTATT
AGAGCTGCTACGCACGACCGATAGCTATGCCAATATCCATACGCTCAAAC
GTAAGATCAACAATTTTCGGACCTCGTATCGCCGGGAATTGCGAAAGGTG
CTGGATAGTGGGAACACATATAAGCCAACGCTTTGGTATTTCAAAGAACT
AGACTTTCTCTATGAACTGGAAACCGGTGAACTGCAATTGGAGGGCATAG
TGGCCGCCGATCGGGATTTGGTTCGAAATTCGAAAGTCCTGCAGAATGAG
TCAAATAAAACGATAACATTCGGAGCGCAATTGGCGGAACAGGAGGTATC
AATGAGCTTTATTGTGAAGCGAGAAATTGAAGTTGATGAGAATATAACCG
AGGATATGCAGCAATTGGAGACCGAAGATGTTGACATTATGTCTGATGCC
TTTCCACACGAAGAGGATATGCTACGTCTTGATGCCGTGGGTGATGGCGA
TGTTGAACCGGAACCCGAGCCTGATAACGATCCCGAATTGGATAACATGG
ATGATCATGTTGATGATTATCGTAACAATTCATCGGCTGGGAGCATTAAG
AACAATGGCTATCAGCAGCACACCGTATCTTCGCACCAGCAGCATAACGG
TGAATCGCAGACTTTCGGATAAATCCGGACGTCGCATCCGTAACCGACGA
AGACGCAGTAGCAATGACACC
FMO06679.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:58:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4004-RB | 1395 | CG4004-RB | 58..804 | 24..771 | 3685 | 99.6 | Plus |
| CG4004-RC | 1288 | CG4004-RC | 404..697 | 477..771 | 1450 | 99.7 | Plus |
| CG4004-RE | 2237 | CG4004-RE | 739..1032 | 477..771 | 1450 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:58:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12745415..12745868 | 24..477 | 2240 | 99.6 | Plus |
| X | 23542271 | X | 12746869..12747162 | 477..771 | 1425 | 99.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:58:01 has no hits.
FMO06679.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:27 Download gff for
FMO06679.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4004-RB | 55..804 | 19..771 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:29:20 Download gff for
FMO06679.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4004-RB | 55..804 | 19..771 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:43:21 Download gff for
FMO06679.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4004-RB | 55..804 | 19..771 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:43:21 Download gff for
FMO06679.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12745412..12745867 | 19..476 | 99 | -> | Plus |
| X | 12746869..12747162 | 477..771 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:27 Download gff for
FMO06679.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12639445..12639900 | 19..476 | 99 | -> | Plus |
| arm_X | 12640902..12641195 | 477..771 | 99 | | Plus |
