FMO06680.5prime Sequence
1123 bp (869 high quality bases) assembled on 2008-09-29
> FMO06680.5prime
GCAGTGGTGTGGCCATTTCCGCTGACGAGGGGATTACAATGCGCAATGGC
AGGGCAAAGGCGCTCCAGGAACACTCCCCGGATCAGGTGGCTACTCCACT
GTTGCCACAGGTGCCGCCACAGGAGCAACAAGATCTTAATCCACAGCAAC
AACAGCAGCAGCAGCAACAACAACAGGCCACTCCGCAAAAGCAGGCCATG
TCCGCAGACGAGAAGAAGGCCACCAAGAAGTCCCTGGTCATCGTAGCGGG
CATTTTTGTGGCCAGCTTGGTCACCATGTGCTATGTGTACGCCATATTCC
CCGAGCTCAACGCGTCGGAGAAACAACACTTGAAAATTCCGCGTGATATC
CAAGATGCTAAGATGCTAGCCAAGGTCCTTGATCGCTACAAGGACATGTA
CTACTTCGAAGTGATGTTTGGCGTCGTGGTCGCCTACGTATTCCTGCAAA
CATTCGCCATTCCCGGATCGCTGTTCCTCTCGATTCTGCTGGGATTCCTG
TACAAGTTCCCGATCGCCCTGTTCCTCATATGTTTCTGTTCGGCGCTGGG
CGCTACCCTATGCTATACACTTTCCAATCTGGTCGGACGTCGTCTGATTC
GTCACTTCTGGCCGAAGAAGACCAGCGAGTGTTCGAAGCATGTCGAGGAG
TACCGGGACAGTTTGTTCAACTATATGCTATTCCTGCGCATGACACCGAT
CCTGCCTAACTGGTTCATCAACCTGGCATCGCCCAGTCATCGGTGTGCCG
CTGCACATCTTCGCATTGGGCACCTTCTGCGGCGTGGCACCGCCCCTCGG
TGATCGCCATCCAGGCGGGCAAGACGCTTCCAGAAGATGACTAGTTCGAG
CGAGGTTTTCCTCTGGACCTCAATGGGCATCCCGATGGCCTGCGCCTGTG
CATCCTTGCTGCCCGGTCTATTCAAGAACAGTTCCAAGCACAAAAAGAGG
CGGAAGCTTTCTAGACCTTCCTTTGGCCGGCGGGCCCAGTAAGTGGTCCT
ATCAAATCAATCATAATCATATACCAACTTGGCCTGGAATTCTGGCCATG
AATTAGTGCTTGAATTCTCCCAATAAAAACGCCGGCGGGCAACGATGCGT
TCTGAACAAATTCCGATGGAGTC
FMO06680.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:06:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| stas-RA | 1882 | CG8408-RA | 456..1411 | 1..958 | 4515 | 98.4 | Plus |
| stas-RB | 2163 | CG8408-RB | 456..897 | 1..442 | 2210 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:06:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17623704..17624205 | 947..443 | 2210 | 97.2 | Minus |
| X | 23542271 | X | 17626938..17627241 | 315..12 | 1520 | 100 | Minus |
| X | 23542271 | X | 17625530..17625658 | 442..314 | 645 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:06:32 has no hits.
FMO06680.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:04 Download gff for
FMO06680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stas-RA | 456..1411 | 1..958 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-29 11:28:40 Download gff for
FMO06680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8408-RA | 457..1412 | 1..958 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:44 Download gff for
FMO06680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stas-RA | 456..1411 | 1..958 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:44 Download gff for
FMO06680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17623721..17624205 | 443..930 | 97 | <- | Minus |
| X | 17625530..17625658 | 314..442 | 100 | <- | Minus |
| X | 17626940..17627241 | 12..313 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:04 Download gff for
FMO06680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17517754..17518238 | 443..930 | 97 | <- | Minus |
| arm_X | 17519563..17519691 | 314..442 | 100 | <- | Minus |
| arm_X | 17520973..17521274 | 12..313 | 100 | | Minus |
