FMO06681.5prime Sequence
897 bp (-68 high quality bases) assembled on 2008-10-01
> FMO06681.5prime
TTAAAAAAAAGTTATCAGTCGACATGACCTCAAAGCTACTGCCCGGAAAC
ATTGTGTACGGAGGTCCTGTGACTGAACGACAGGCCCAGGATAGCAGATC
CTTGGGTCAGTACATCCTCGACAAGTACAAGAGCTTTGGCGACCGGACGG
TGCTGGTGGATGCCGTCAATGGAGTGGAGTACTCTGCCAGTTTCATGCAC
AAGTCCATTGTACGGCTGGCATACATCCTTCAAAAACTGGGAGTCAAACA
GAATGACGTCGTTGGTTTGTCTAGCGAAAACAGCGTCAACTTCGCCCTGG
CCATGTTCGCTGGTCTAGCAGTTGGGGCTACGGTTGCTCCCCTTAACGTA
ACATATTCCGATCGTGAGGTGGACCACGCCATTAACTTGTCCAAGCCAAA
GATCATATTCGCCTCTAAGATTACCATTGATCGTGTTGCCAAAGTGGCCA
GCAAGAATAAGTTCGTCAAGGGCATCATTGCGCTCAGTGGAACTTCCAAG
AAATTTAAGAACATCTATGATCTTAAGGAGCTGATGGAGGACGAGAAGTT
CAAGACACAGCCTGACTTCACGAGTCCTGCGGCCAATAAGGACGAGGACG
TGTCTCTTATTGTGTGCTCTTCTGGAACCACCGGACTTCCTAAAGGAGTG
CAGCTGACCCAAATGAACCTGCTGGCCACTCTCGAACTCACAAATCCAAC
CCACTGTCATTCCAATGGAGGAGGTCACTCTACTCACTGTCATTCCCCTG
GTTCCACGCCTTCGGCTGTCTGACGCTTATCACCACCGCCTGCGTTGGCG
CACGATTTGGTATACCTGCCCAAGTTCGAGGAAAAGCTCTTCCTTTCTGC
CCATTGAAAATATCGCGTGATGATGGCCTTCCTGGGGGCCCCACTGG
FMO06681.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:41:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6178-RA | 2008 | CG6178-RA | 265..1134 | 24..896 | 4155 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:41:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24153097..24153758 | 24..685 | 3280 | 99.7 | Plus |
| 3R | 32079331 | 3R | 24153824..24154022 | 696..896 | 770 | 94.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:41:11 has no hits.
FMO06681.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:53:46 Download gff for
FMO06681.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6178-RA | 257..1134 | 16..897 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:29:18 Download gff for
FMO06681.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6178-RA | 290..1167 | 16..897 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:15:46 Download gff for
FMO06681.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6178-RA | 257..1134 | 16..897 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:15:46 Download gff for
FMO06681.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24153090..24153767 | 14..695 | 98 | -> | Plus |
| 3R | 24153824..24154022 | 696..897 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:53:46 Download gff for
FMO06681.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19978812..19979489 | 14..695 | 98 | -> | Plus |
| arm_3R | 19979546..19979744 | 696..897 | 95 | | Plus |
