FMO06682.5prime Sequence
1122 bp (-72 high quality bases) assembled on 2008-10-01
> FMO06682.5prime
ATAAAAGAAACCCTATCAGTCGACATGGAGACTGTGAAGGAACTGGTTCA
ATTCATGCAACCGAATCAGCGGCTGGACTTAAAGGCAGTAGCCCTAACAC
ATGTTTTAGGATTGACTGGCAGCTCAGAGGGCAAATCAGCAATACTTTCA
CTAGATGAAATGCTAATGGCCATTTTTGGACTGACATTCGATGCAAATCA
AACGGTGGCCAAGGATGCGGTTTTAAGCCTAATAAATTTAACGTCCGAAG
AGGAAGCAGCAATTAAAGTTTTCCAACTGGCGAAACAATTGCAACCGCCA
TTTGCCATCGTAGAAGTGGCTGCCAAGGAAATAACCAACGAGCAATCCGA
TCTGGCTGATCCCTGGAGCATGGTCTTGAGCAACCTAACGCGAGTGGAAT
CTCTGGTCCACGAGATCCTGGACACGCTAGAAAGAGACGATCACACGCTA
CCCCGCTTGGCAAAGGCCTTCGCGCAATTGGACTACAACAAAAAGAAGGC
CAAGCTGCATTATCTGGCGCCCATCTTCTGCAATCTGACCCAGGTTTCTC
GGGGCAGGGAACTGTGCTGCCATCGGAAATACGAGTTGCTGGAGAAACTA
CTGCCCTTTGCCTCATTCGAGGGAAGTGTAGTGCGGCGTGGCGGCACCAT
TGGCATTCTGAAGAACGTTTGCTTCGACACTGTCTACCACGATGTGATCC
TAACGAGCAGAGCAGTATTCTGGTGGCAATCCTGCAGCCACTGTGCGGTC
CAGAAGAGTTCAGCGACGAGGACAATGAATTGTTGCCCATCGAACTGCAG
TACCTGCCTGAAAGTAAAACGCGCGAAGAGGATCCCGATTTGCGGAAATG
CTGCTGGAGTGTTGCTGCAACTGTGCTCCACACGTCGCAGCCCGGAAATC
TGCGCTTCAGGGGCGTCTATGAGATCTGCGGGAGTACACAAGTGGGAAGC
CAAGGGGGCAAGACAGCGACTGTCTGCTGGCCTGCAGAACGTGGGACTTC
TGAACAGAAGAGAAAAGATTGGCTTGACAAACTATTAAAACGAATTGAAA
TGCCTGCCAGACATCCAAAAATTCGTCTCAGGAAAGACCCGTCTATGGGA
AGGTTGCTTGAATGTCAGCTTT
FMO06682.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:37:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6073-RB | 1275 | CG6073-RB | 91..1196 | 25..1111 | 4630 | 96 | Plus |
| CG6073-RA | 1564 | CG6073-RA | 91..1196 | 25..1111 | 4630 | 96 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:37:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26187771..26188275 | 800..297 | 2445 | 99.4 | Minus |
| 3R | 32079331 | 3R | 26188332..26188521 | 297..108 | 950 | 100 | Minus |
| 3R | 32079331 | 3R | 26187523..26187717 | 985..798 | 565 | 94.4 | Minus |
| 3R | 32079331 | 3R | 26188632..26188717 | 110..25 | 430 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:37:47 has no hits.
FMO06682.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:33:49 Download gff for
FMO06682.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6073-RA | 91..1084 | 25..1006 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:21:30 Download gff for
FMO06682.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6073-RA | 88..1081 | 25..1006 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:36:07 Download gff for
FMO06682.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6073-RA | 91..1084 | 25..1006 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:36:07 Download gff for
FMO06682.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26187771..26188274 | 298..800 | 99 | <- | Minus |
| 3R | 26188332..26188519 | 110..297 | 100 | <- | Minus |
| 3R | 26188633..26188717 | 25..109 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:33:49 Download gff for
FMO06682.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22014355..22014439 | 25..109 | 100 | <- | Minus |
| arm_3R | 22013493..22013996 | 298..800 | 99 | <- | Minus |
| arm_3R | 22014054..22014241 | 110..297 | 100 | <- | Minus |
