FMO06684.5prime Sequence
379 bp (190 high quality bases) assembled on 2008-10-01
> FMO06684.5prime
TGGGAGGCAAAGAAGCCGCTGGTCATCGAGGATATCGAGGTGGCGCCGCC
CAAGGCTCATGAGGTGCGCATCAAGATCACGGTCACGGGCGTCTGCCACA
CGGATGCCTTCACCCTGAGCGGTGCCGATCCGGAGGGCCTGTTCCCAGTG
GTGTTGGGACATGAGGGCGCCGGCATCGTGGAGAGCGTCGGCGGGGGCGT
GACCAACTTCAAGGCTGGCGACCATGTCATCGCTCTCTACATCCCCCAGT
GCAACGAGTGCAAGTTCTGCAAGAGCGGCAAGACGAATCTCTGCCAAAAG
ATCCGACTTACCCAGGGCGCTGGAGTCATGCCCGAGGGCTCCTCCCGTCT
CAGCTGCAAGGGACAGCATTTGTTCCACT
FMO06684.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:10:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fdh-RA | 1337 | CG6598-RA | 155..533 | 1..379 | 1820 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:10:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10871710..10872027 | 379..62 | 1530 | 98.7 | Minus |
| 3R | 32079331 | 3R | 10872094..10872158 | 65..1 | 310 | 98.5 | Minus |
Blast to na_te.dros performed 2014-11-28 19:10:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aurora-element | 4263 | aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). | 3015..3055 | 240..279 | 121 | 80.5 | Plus |
| Dsim\ninja | 6644 | Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). | 5299..5339 | 240..279 | 103 | 75.6 | Plus |
FMO06684.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:31 Download gff for
FMO06684.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fdh-RA | 155..533 | 1..379 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:30:46 Download gff for
FMO06684.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fdh-RA | 154..532 | 1..379 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:02:01 Download gff for
FMO06684.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fdh-RA | 155..533 | 1..379 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:02:01 Download gff for
FMO06684.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10871710..10872025 | 64..379 | 98 | <- | Minus |
| 3R | 10872096..10872158 | 1..63 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:31 Download gff for
FMO06684.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6697432..6697747 | 64..379 | 98 | <- | Minus |
| arm_3R | 6697818..6697880 | 1..63 | 98 | | Minus |
