FMO06685.5prime Sequence
642 bp (640 high quality bases) assembled on 2008-10-01
> FMO06685.5prime
CAGTCGACATGAGCATCGACGACGTCATCTATGTGATCTGCCTGCTGGGC
TGCATCGGAGCCGGCAGCTATGTGAAGAAGATCGCGGACGAGGGCCAGCG
CAAGCTGGTGTCCACTGGGCTAGGCGTTCTTGTGGTTGTCATTGTCTCGG
GGCTCCACAGTCTGCACTGCTTTGTTTCCCTGGCACTGGGCACGGCCGCC
GTGCTTCTCGTGCACCCGAGCAAGGGTCACCTGGTCACGTTTGCGGTCAT
GTTTGGCTACCTGGTGTTCTTCCGCATTTTCGACTTCTACTTCGGCATTC
CCGGCCACACGAACATGATACAAATGATACTAACACTAAAGGTTTCGGGC
ATTGCCTTCGAGAAGACTGCCGCCTGGAAGCGACTGCAAGCGCACGACGA
GCAAAAGAAGAACGACCAGCGGGATGTGCACCAGGAGAGTCCAATCGAGA
TCACCGACTACGATGTGGAATTGCAGAGCCTGAGTGCCGCTGAGATCCTG
CACTACAGCTTCAACTACATCGGAGTTCTTACAGGTCCCTATTATCGGTA
TCGCACATACAGGGACTACTTTGAGATGCCTTTCAAGACCTACGCTCCAA
CTGTTGAAGCCCACCCTGGAGAAGCTGAAGTACGCCGTCTTC
FMO06685.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:10:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| frj-RA | 2097 | CG9526-RA | 205..837 | 9..642 | 3145 | 99.8 | Plus |
| frj-RB | 2156 | CG9526-RB | 264..896 | 9..642 | 3145 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:10:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6456471..6456682 | 9..220 | 1060 | 100 | Plus |
| 2L | 23513712 | 2L | 6456919..6457115 | 340..536 | 985 | 100 | Plus |
| 2L | 23513712 | 2L | 6456742..6456866 | 219..343 | 625 | 100 | Plus |
| 2L | 23513712 | 2L | 6457335..6457444 | 532..642 | 505 | 99.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:10:09 has no hits.
FMO06685.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:19 Download gff for
FMO06685.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| frj-RB | 260..896 | 1..642 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:29:15 Download gff for
FMO06685.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9526-RA | 174..810 | 1..642 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:01:42 Download gff for
FMO06685.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| frj-RB | 260..896 | 1..642 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:01:42 Download gff for
FMO06685.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6457338..6457444 | 535..642 | 99 | | Plus |
| 2L | 6456744..6456864 | 221..341 | 100 | -> | Plus |
| 2L | 6456921..6457113 | 342..534 | 100 | -> | Plus |
| 2L | 6456467..6456682 | 1..220 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:19 Download gff for
FMO06685.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6456744..6456864 | 221..341 | 100 | -> | Plus |
| arm_2L | 6456921..6457113 | 342..534 | 100 | -> | Plus |
| arm_2L | 6457338..6457444 | 535..642 | 99 | | Plus |
| arm_2L | 6456467..6456682 | 1..220 | 98 | -> | Plus |
