FMO06687.5prime Sequence
1059 bp (-74 high quality bases) assembled on 2008-10-01
> FMO06687.5prime
ATAAAAGGAAGTTATCAGTCGACATGGAACACTTTCATCAAATACTGCAA
TTGGCTGCTCAGCAACAACAACAAGTACAACAGCAACAGTTGCAACAACA
CCAGGTGGTCGTCCAGCATAATCAGCAGCAGGCGCACCAGAACAGCTCCA
ATACCACAGCCGGCGTGGGCACCCAACAGCTGTTCACATACAAAATGGCC
AGCAGTTTTCCGAATCCGGCCACGACGATGGCCCAAGTGGTGGCCACATC
GAACGCAGCCGGCACCACGGGCTATGATTATCGTCTAAATATGGCACAGG
CAGCAGCAGCAGCAGCCGTACCCGGCTCCCAGTGGTGGTATTCGGCCGCC
AATCAGGGACAGGTCGATGCTAATACAGCGGCGCAACTGCAGCACCAGCA
GCAGCAACAGCAGCAGCAACAACAGCAGCAGCAGCAACAGCACCAGCAGC
AACAACAGATGCAACAGCAGCAGCAGCAACAGAATGTCATCAATTCGGCG
AGCCCCATGAGCAGAGTCAAGGCCGATGCCAAGCCCAGAGGCCGAATGAC
CGCCTACGCATACTTTGTACAAACTTGCAGAGAGGAGCACAAAAAGAAGC
ATCCCGATGAGACGGTGATATTCGCCGAATTCTCGCGGAAGTGCGCCGAA
CGGTGGAAGACAATGGTGGACAAGGAGAAGAAGCGCTTCCACGAAATGGC
CGAGAAGGACAAGCAGCGATATGAGGCGGAAATGCAGAACTATGTGCCGC
CCAAGGGAGCGGTTGTGGGGACGCGGCAAGAAGAGGAAACAGATCAAGGA
CCCCAATGCTCCAAAACGTTCATTGTCTGCTTCTTCTGGTTCTGCATGAC
ATGAGAAATAAGGTGAATGCACTTAATCCCGAGTTCGGGTGGGCGACATC
GCCAAAGAGCTGGGACGAAGTTGGTCCGATGTGGATCCCGAAGTCAGCAA
AGTACGAGTCGATGGCCGAGCGGGAAAAGGCTCGATTAGAATCCAAATGA
CCGAATTCAAAAATAACCGGGAAATGCCTGTCCGCACCGTCGATGTCTGC
TTCCATGCA
FMO06687.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:09:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dsp1-RC | 4511 | CG12223-RC | 718..1746 | 24..1045 | 4535 | 96.6 | Plus |
| Dsp1-RA | 3990 | CG12223-RA | 197..1225 | 24..1045 | 4535 | 96.6 | Plus |
| Dsp1-RB | 3915 | CG12223-RB | 122..1150 | 24..1045 | 4535 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:09:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16336290..16336743 | 47..500 | 2210 | 99.1 | Plus |
| X | 23542271 | X | 16337084..16337251 | 658..826 | 795 | 99.4 | Plus |
| X | 23542271 | X | 16336850..16337009 | 500..659 | 785 | 99.4 | Plus |
| X | 23542271 | X | 16337388..16337547 | 831..986 | 495 | 93.1 | Plus |
Blast to na_te.dros performed 2014-11-28 19:09:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2435..2854 | 59..484 | 341 | 57.4 | Plus |
FMO06687.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:58 Download gff for
FMO06687.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dsp1-RB | 117..1158 | 16..1053 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:29:09 Download gff for
FMO06687.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dsp1-RC | 713..1754 | 16..1053 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:00:59 Download gff for
FMO06687.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dsp1-RB | 117..1158 | 16..1053 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:00:59 Download gff for
FMO06687.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16337086..16337249 | 660..824 | 99 | -> | Plus |
| X | 16337381..16337547 | 825..986 | 92 | == | Plus |
| X | 16336291..16336743 | 48..500 | 99 | -> | Plus |
| X | 16336851..16337009 | 501..659 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:58 Download gff for
FMO06687.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16230324..16230776 | 48..500 | 99 | -> | Plus |
| arm_X | 16230884..16231042 | 501..659 | 99 | -> | Plus |
| arm_X | 16231119..16231282 | 660..824 | 99 | -> | Plus |
| arm_X | 16231414..16231580 | 825..986 | 92 | == | Plus |
