FMO06692.5prime Sequence
1137 bp (880 high quality bases) assembled on 2008-09-29
> FMO06692.5prime
CAGTCGACATGAGCATGAGCATGGCACCGGCCACCGTCCTCCAGTTGCTG
CGCGGCCTTAGCACGCCGCGTCTTCTTACCCACATCCACCAGCACCGCGC
ATTGGGTAATCACTACCACCACTACCACCAACACTACCAGCACCAGCACC
ACCTCCTCCACCACCAGCAGCAGTACCTCCGACTATTCACTTGCACAGCA
CTGCCAGCGGCTGCTCCGGCGCTCTTCTCGATCCTGCACACAGCGCGTGG
CTACAGCAGCACAACCAAGCAGGAAGCTGGAGCCACTGGCCCCAATGATG
CGCCCGAGGTCGCACCGAATGCCCCGCTGCTGGCCAAGCTCTTTCCTCAG
ACCTCGCCGGAGGTGGACAGCAACGCCGAGCAGGAGCGCAAGAAGCGCGA
GGAGGAGGAGGAAAAGGAGAACGAGCGTGCCTGGAAGCGCATGAAGCTGG
GCTTTGCAATATTCGGAGGCAGCGCCGTGGCTGCTGGATTCTGGGCCGTC
TACGAGTTCGGCAAGCCCGAGGTGGACTCCAACGGGCAGCCCATCGAGGA
CGAGTTCACACACAAGCCGCTGGTACAGCAGTATCTGCAGCGGATGTGGA
AGAGCATTCACTACTATCAGCGCATGATCCAGGAGCCGTCGCGCGCCAAA
CTGCTGCCCGATCCGCTCAAGCCGCCGTACGTGCAGCCGCGCTACACGCT
TGTGCTGGAGATGAAGGACGTGCTGGTGCATCCGGACTGGACTTACCAAA
CTGGCTGGCGCTTTCAAGAAGCGTCCCGGCGTCCACCACTTTTCTGGCCG
AGTGCGCCAAGGACTTTGAAATTGTCGTCTTCACCGCCGAACAGGGATGA
CCGTGTTCCCCATCCTGGATGCCCTCGATCCAACGGCTACATTCTGTACC
GCCCTGGTCATGGATGCCACGCACTTTGTGGACCGGCATCATGTGAAGAC
CTGGACAACCTTAATCGCGACTTCAGAAGGTGATTGTTGTGGACTGGGGA
CGCTGATGGCCACCAGATGCATCCTGGACAACTCATTTCGGCTTTGGCCC
GCTGGCATGCCACGAACGATGATTGCCACTTGCTGGGACCCTTATCGCTT
TCCTAAGATATTTGGCACGAAACAAGTGGAAAGACGT
FMO06692.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ttm50-RB | 1868 | CG2713-RB | 142..1244 | 8..1114 | 4880 | 96.9 | Plus |
| ttm50-RA | 1728 | CG2713-RA | 142..1244 | 8..1114 | 4880 | 96.9 | Plus |
| ttm2-RA | 1513 | CG12313-RA | 769..1117 | 651..998 | 325 | 74.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2730954..2731478 | 975..451 | 2235 | 97.5 | Minus |
| X | 23542271 | X | 2731790..2732049 | 267..8 | 1300 | 100 | Minus |
| X | 23542271 | X | 2731534..2731717 | 451..268 | 920 | 100 | Minus |
| 3L | 28110227 | 3L | 275923..276053 | 651..782 | 220 | 79.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:39:14 has no hits.
FMO06692.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:33:54 Download gff for
FMO06692.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ttm50-RA | 142..1254 | 8..1125 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-29 11:28:57 Download gff for
FMO06692.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ttm50-RA | 137..1249 | 8..1125 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:24:24 Download gff for
FMO06692.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ttm50-RA | 142..1254 | 8..1125 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:24:24 Download gff for
FMO06692.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2730949..2731477 | 452..979 | 97 | <- | Minus |
| X | 2731534..2731717 | 268..451 | 100 | <- | Minus |
| X | 2731790..2732049 | 8..267 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:33:54 Download gff for
FMO06692.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2624982..2625510 | 452..979 | 97 | <- | Minus |
| arm_X | 2625567..2625750 | 268..451 | 100 | <- | Minus |
| arm_X | 2625823..2626082 | 8..267 | 100 | | Minus |
