FMO06696.5prime Sequence
800 bp (572 high quality bases) assembled on 2008-09-29
> FMO06696.5prime
CAGCCGACATGCTGCGCAACGGCCAGAATCAAGCGCAATTGCTGGCCCGG
AGCCTTGGACAGCTGGCGCGGGGAATGGCCAGTTCGAAACGGGTCAGCAG
TAAGAAGGAGGATCTCAAGCCAAAACTGCCAAAGCCACCGACAGTCGAGA
TTCCGATGGAAGAGCCGCTGAATGCCAGCTATTTGTCCAAAACTCTGGGT
AGTTCCTATCGTTCTTGGGCGGCAGCCTTAGAGAAGCACCCAGAGCTCAA
GACGTTAAAGCGCAAGGACTTGCTAAGCTCCTACGACACTTTGAAATCAC
TGGACTATAGTGGGGACGACATCATAGCGAAACCCATGATCATCTATTAT
GGCGCCACCACTTTGGCCAATCGCCACAGTGTCTTGCAGGAGGGCGGCTT
CCACAACGTGACTGTCCAAACGCTGGCCAAGTATGTGACGGTGGTCAACA
AGCCGATAGAAGTCTTGAAGGCACATAATTACATCCCCTTCGATGTGAAG
GTGGCGGAGCGTCTGGCGGGATATTTTAAGGATATCAAGCTGCCGGTGGA
TTTACGGGAGCTGGAGAGTGAGACGCAGCCCGGGACAACTTGACAAAACG
CGAACAAGGGTACCGGCGGGAACGGCGGCAGAGGGACGACAACAAGGACA
GAAACGGGGGCGCGTTTACCGCGCCTCCCCCCCCAAAGTTTTCGAGCGGG
AGGACCCCCTTGGACCTGCGAAACCAAGAGAGAATTTTACCCCCCACGGG
CCGCGCGCCACCCAAAAACATAACTAAAATAAATAATACCAAATTAAATT
FMO06696.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mTerf5-RA | 1999 | CG7175-RA | 253..947 | 9..697 | 2830 | 94.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18222813..18223189 | 574..198 | 1855 | 99.5 | Minus |
| 2R | 25286936 | 2R | 3525610..3526041 | 574..132 | 1790 | 94.1 | Minus |
| 3R | 32079331 | 3R | 18223238..18223430 | 201..9 | 965 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:39:11 has no hits.
FMO06696.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:33:52 Download gff for
FMO06696.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mTerf5-RA | 253..818 | 9..574 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-29 11:28:46 Download gff for
FMO06696.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7175-RA | 252..817 | 9..574 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:24:22 Download gff for
FMO06696.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mTerf5-RA | 253..818 | 9..574 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:24:22 Download gff for
FMO06696.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18222813..18223188 | 199..574 | 99 | <- | Minus |
| 3R | 18223241..18223430 | 9..198 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:33:52 Download gff for
FMO06696.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14048535..14048910 | 199..574 | 99 | <- | Minus |
| arm_3R | 14048963..14049152 | 9..198 | 100 | | Minus |
