FMO06701.5prime Sequence
1052 bp (905 high quality bases) assembled on 2008-10-01
> FMO06701.5prime
CAGTCGACATGGCCACGGCTGAAGCCCAGATCGGTGTGAACAGGAACTTG
CAGAAGCAGGACCTCAGCAACTTGGACGTCTCTAAACTAACGCCTCTATC
ACCGGAGGTCATCTCCCGACAGGCGACCATCAACATCGGCACCATCGGTC
ATGTGGCTCACGGCAAATCCACGGTGGTCAAAGCCATATCCGGCGTGCAG
ACTGTGCGCTTCAAGAACGAACTGGAGCGCAACATCACAATCAAGCTGGG
TTATGCCAACGCCAAAATCTACAAGTGTGACAACCCCAAGTGCCCGCGCC
CGGCCAGCTTCGTATCGGATGCATCCAGCAAGGACGACAGCTTGCCCTGC
ACTCGGCTCAACTGCTCCGGCAACTTCAGACTGGTGCGACATGTGAGCTT
CGTGGATTGCCCCGGTCACGACATTCTTATGGCTACCATGTTGAACGGTG
CTGCTGTGATGGACGCTGCTCTGCTGCTCATTGCTGGCAATGAATCCTGT
CCACAACCGCAAACCTCTGAGCATTTGGCCGCCATTGAGATTATGAAGCT
GAAACAGATTCTGATCTTGCAAAACAAGATCGATCTGATCAAGGAGAGCC
AGGCGAAAGAGCAGTACGAGGAGATCACCAAATTCGTCCAGGGCACCGTA
GCTGAGGGCGCTCCGATCATTCCGATCTCGGCCCAGCTTAAAGTACAACA
TCGATGTGCTCTGCGAGTACATTGTGAACAAGATACCAGTGCCGCCGCGT
GACTTCAATGCCCCCGCCCCGTCTGATCGTCATCCGATCCTTCGACGTGA
ACAACCAGGCTGTGAGGTGGCAGACCTTAAAGGCGGTGTGGCCGGTGGCT
CCATTCTGAGCGGCGTGCTGAAGGTAGGCCAAGAGATCGAGGTGCGCCCG
GGCGTTGGGACCAGGATACGATGGTAACATCACCTGCCGTCCAATCTTCT
TCCCTAATCGTCTCCGCCCTTCGCCAGAAAGAATGAACTGCAGAACGCCG
TGCCCCGGCGGCCTGATTTGGTGTGGCACCAAGATCGAATCCACGCCTGT
GG
FMO06701.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:37:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eIF-2gamma-RD | 2062 | CG43665-RD | 110..1139 | 7..1038 | 4735 | 97.9 | Plus |
| eIF-2gamma-RB | 1922 | CG43665-RB | 110..1139 | 7..1038 | 4735 | 97.9 | Plus |
| eIF-2gamma-RC | 1886 | CG43665-RC | 141..1103 | 74..1038 | 4400 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:37:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15258834..15259388 | 1038..482 | 2115 | 95.2 | Minus |
| 3R | 32079331 | 3R | 15259449..15259687 | 487..249 | 1195 | 100 | Minus |
| 3R | 32079331 | 3R | 15262545..15262722 | 251..74 | 890 | 100 | Minus |
| 3R | 32079331 | 3R | 15263281..15263349 | 75..7 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:37:36 has no hits.
FMO06701.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:33:41 Download gff for
FMO06701.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF-2gamma-RB | 105..1151 | 1..1052 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:29:01 Download gff for
FMO06701.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(var)3-9-RB | 121..1167 | 1..1052 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:36:01 Download gff for
FMO06701.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF-2gamma-RB | 105..1151 | 1..1052 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:36:01 Download gff for
FMO06701.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15258821..15259383 | 487..1052 | 95 | <- | Minus |
| 3R | 15259450..15259686 | 250..486 | 100 | <- | Minus |
| 3R | 15262547..15262721 | 75..249 | 100 | <- | Minus |
| 3R | 15263282..15263354 | 1..74 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:33:41 Download gff for
FMO06701.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11084543..11085105 | 487..1052 | 95 | <- | Minus |
| arm_3R | 11085172..11085408 | 250..486 | 100 | <- | Minus |
| arm_3R | 11088269..11088443 | 75..249 | 100 | <- | Minus |
| arm_3R | 11089004..11089076 | 1..74 | 97 | | Minus |
