FMO06703.5prime Sequence
1164 bp (862 high quality bases) assembled on 2008-10-01
> FMO06703.5prime
CAGTCGACATGTTCTTGATGACAGCCGGCACCTCCAATTTTCTTTCTGCA
GCCTGGAGATCAGAGGCTGAGGAGTCCAAGAGTAAGGAGAACGGGAGTCT
CTGCTGCTGCGAGTACGTGGCTGAGGACAGTCGAGAGCGATCCCACATCC
TAGGATGCTGTTGTAACTGCGTGGACTTCGACTTAGTTTGCACAAGACTT
GTCACCTGCCGAGCCATTGATCGAAGGAACATCGACGGCATGCTCATCGC
CTTCCAGGATAGACTGCGCTTGCCATGGCGCGGAGGAGCCAAGCGAATCT
CGCCCGCAGCCGTTGCTCCCGCCTTCATTGTCCCCCTCATGCTGGGATTG
GCCACTCTGAACTCAAAGACCGCCATAGTGCTGATGCTCACGCTGGTGGG
CTTCACCATCTGGGGCATGGAGCTGGCTAAGCGGACCGCCACGCGGACAA
ACTTCTTTTTGAGCTGGCTGGTCTTCTCGGTGTTCTACATGATCATCATA
TTTGAGTTTCAGGTTCCTCTGCTGGAGCTGGCTCCGGAGGAGAACTACGC
GTTAATGTTCTTCTCCTGTGCCGCTTTGTACTGCCTCTATTCCGCCAAGG
CACTGTCGCCCTTGAAATCTTGTTTCTGCTCAATACGGAACCACGCCCAA
GGATGAGCTGCCTGGGATCGCCGAGGCTTCGAGTGGCGAGGAGCAGGCAG
AGGCCCAGACCACACTCCCAGATGGAGAGTGTGCTGAGTTTGGATGATGA
CGAGGTGGGGGATATGGACACTGCTGAGCGATCTGGCTTTGATGCACGGT
CAGCCCAATATCTGCGAGATCTGCCGGAAAGTTACTCCCAGGCGGGCATA
CCACTGTCCCCGTCTGCGGAACTTGCGTGAGAGGCGCGATCATCACAGCT
ACTGGCTAACTGCTGCATTGGCGAGCGGAACTACCTGTGGTACATTGTTG
GACTGGGCCCTGTCGGAAGATCGCTTCTCCTGCTCGGCGCAAATTGGACC
TCACTTCCATTTGCCATCCGTTAATGGTGGTGCGACCGCCTTGGTTATCC
AGGTCTTTTGCCCCACCGACGGCAGTGAAGTGGTTTCGAGGCTTCCCCCC
TGGAATCTCCTTGTGTGGTGGCCTTGCCTCGCCTTTGCCTCATTTTCTTC
CCTACCATAGCCCT
FMO06703.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:26:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GABPI-RA | 1650 | CG17257-RA | 222..1361 | 9..1162 | 4965 | 96.5 | Plus |
| GABPI-RB | 1556 | CG17257-RB | 128..1267 | 9..1162 | 4965 | 96.5 | Plus |
| GABPI-RD | 1450 | CG17257-RD | 38..1161 | 25..1162 | 4885 | 96.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:26:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3030998..3031861 | 195..1063 | 3675 | 97.7 | Plus |
| 2L | 23513712 | 2L | 3030760..3030947 | 9..196 | 940 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:26:06 has no hits.
FMO06703.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:08 Download gff for
FMO06703.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GABPI-RB | 124..1200 | 1..1085 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:32:01 Download gff for
FMO06703.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17257-RA | 192..1268 | 1..1085 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:01:30 Download gff for
FMO06703.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GABPI-RB | 121..1197 | 1..1085 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:01:30 Download gff for
FMO06703.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3030753..3030947 | 1..196 | 97 | -> | Plus |
| 2L | 3031000..3031866 | 197..1070 | 97 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:08 Download gff for
FMO06703.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3030753..3030947 | 1..196 | 97 | -> | Plus |
| arm_2L | 3031000..3031866 | 197..1070 | 97 | <- | Plus |
