FMO06705.5prime Sequence
580 bp (574 high quality bases) assembled on 2008-10-01
> FMO06705.5prime
TCTACGATGAGCACAAGTTGCCCTACATCGATCTGGGCTCGGCACAGATC
CGCATGGAGAAGGAACAAGCGCCGGAATGGGCACTGAAGAAGGCACAGGA
TGAGTTGCGGGAAGTGCCCGGCGTCAAGGAGCAGGCCATCAAGGAACTCA
GGGAACTCATTCAAAATGAAAAGTACCTGAACCTGCCATTGGATGATGAG
TATATGATGATGTTCCTGCGTCCCACCCATTACTATCCAGAAAGTGCCTT
GAAAAGGCTCAAGAACTTTTATCACATGAAATTGAAGTATGGAGCCGCTT
GCGAGAACATAATCCCCAGCAAGTTGAGAAACGTTTTCGAGGCAAATATT
CTGAATTTGCTGCCCCAAAGAGATCAACACGGCCGTCGGCTTTTGGTGCT
GGAAGCTGGCAAAAAATGGAAGCCATCGCAAGTGCCCTTGGTGGATCTAT
TCCGCGGCATTCAATTGACCGTACTGGGTTCTATGGTGGAGCCCTACTCA
CAAATTTGCGGCTCAATTGTCATTATCGATATGGAAGGGCTGCCACTTAC
CCACATTACACAATTTACACCGTCATTTGC
FMO06705.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5973-RF | 1463 | CG5973-RF | 255..833 | 2..580 | 2865 | 99.7 | Plus |
| CG5973-RE | 2204 | CG5973-RE | 383..961 | 2..580 | 2865 | 99.7 | Plus |
| CG5973-RG | 1313 | CG5973-RG | 105..683 | 2..580 | 2865 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7443669..7443832 | 2..165 | 820 | 100 | Plus |
| 2L | 23513712 | 2L | 7444059..7444213 | 257..411 | 775 | 100 | Plus |
| 2L | 23513712 | 2L | 7444273..7444399 | 412..538 | 620 | 99.2 | Plus |
| 2L | 23513712 | 2L | 7443894..7443985 | 166..257 | 460 | 100 | Plus |
| 2L | 23513712 | 2L | 7444463..7444507 | 536..580 | 210 | 97.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:39:56 has no hits.
FMO06705.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:34:28 Download gff for
FMO06705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5973-RD | 1721..2300 | 1..580 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:28:59 Download gff for
FMO06705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5973-RA | 368..947 | 1..580 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:24:51 Download gff for
FMO06705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5973-RG | 104..683 | 1..580 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:24:51 Download gff for
FMO06705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7443668..7443832 | 1..165 | 99 | -> | Plus |
| 2L | 7443894..7443985 | 166..257 | 100 | -> | Plus |
| 2L | 7444060..7444213 | 258..411 | 100 | -> | Plus |
| 2L | 7444273..7444398 | 412..537 | 99 | -> | Plus |
| 2L | 7444465..7444507 | 538..580 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:34:28 Download gff for
FMO06705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7443668..7443832 | 1..165 | 99 | -> | Plus |
| arm_2L | 7443894..7443985 | 166..257 | 100 | -> | Plus |
| arm_2L | 7444060..7444213 | 258..411 | 100 | -> | Plus |
| arm_2L | 7444273..7444398 | 412..537 | 99 | -> | Plus |
| arm_2L | 7444465..7444507 | 538..580 | 97 | | Plus |
