FMO06712.5prime Sequence
647 bp (645 high quality bases) assembled on 2008-10-01
> FMO06712.5prime
CTTATGCTAAGTTATCAGTCGACATGAGCCGCGAAGTGTTATCACCTCCT
GTCCAAAAGATGAGCCAGAATCGGCGCTATAGAGTCAACGTTGTTCACGA
CGACTTCGGTGGCGACAAGTGGAATGGTCAAAACCAACGGAATAAACTAG
AGTACAAAGCCTACGAAGAGCCGGATCTTTATGGTGATGATGATGATGAC
GAGGACGATGCGGTTGTCAAATGTATTAAGGAGTCAGCAAATGGCGATTT
TAGTCTTTCCATTCATGTGTCCAAATCATTTTACGGTGGACTAATTGGCA
TGAAAGGATCTACGAAGCGCCGCATAGAGGAAGAGACCCGTACAGAGATC
TTTGTTCCGCGTCCGAACGATAGGTCAAACGAAGTGACTATCAAGGCCAA
GCAACGCAGTCAAGTATGCGCTGCACTGCGACAAATCCACCATCTTGTAG
CCTCTTTACGAAAAAAAATGAAACCGACACACTTTTTGGCCGTGGCTCTA
AACTCTGGAGAAGTCAAGGAGCGTTTTATGGAACTAAAGAAATGCATTTT
GGAGGCCGAGTTGCCAGGCATCGATAAGGAGCTTTTCACTCCGGAGTGCT
GCATTCATCTTACCTTAGGCGTCTATGTGCTGCTAGATGACATTGAA
FMO06712.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:07:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12129-RA | 1239 | CG12129-RA | 97..721 | 23..647 | 3125 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:07:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10033757..10034021 | 275..539 | 1325 | 100 | Plus |
| 2R | 25286936 | 2R | 10033400..10033551 | 23..174 | 760 | 100 | Plus |
| 2R | 25286936 | 2R | 10034071..10034180 | 538..647 | 550 | 100 | Plus |
| 2R | 25286936 | 2R | 10033603..10033703 | 174..274 | 505 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 23:07:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G3 | 4605 | G3 G3 4605bp | 1429..1526 | 22..118 | 118 | 60.6 | Plus |
FMO06712.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:16:59 Download gff for
FMO06712.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12129-RA | 92..721 | 14..647 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:32:31 Download gff for
FMO06712.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12129-RA | 102..729 | 14..645 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:50:41 Download gff for
FMO06712.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12129-RA | 92..721 | 14..647 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:50:41 Download gff for
FMO06712.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10033757..10034021 | 275..539 | 100 | -> | Plus |
| 2R | 10034073..10034180 | 540..647 | 100 | | Plus |
| 2R | 10033395..10033551 | 18..174 | 98 | -> | Plus |
| 2R | 10033604..10033703 | 175..274 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:16:59 Download gff for
FMO06712.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5920900..5921056 | 18..174 | 98 | -> | Plus |
| arm_2R | 5921109..5921208 | 175..274 | 100 | -> | Plus |
| arm_2R | 5921262..5921526 | 275..539 | 100 | -> | Plus |
| arm_2R | 5921578..5921685 | 540..647 | 100 | | Plus |
