FMO06715.5prime Sequence
1042 bp (916 high quality bases) assembled on 2008-10-01
> FMO06715.5prime
CGTTATCAGTCGACATGGCAATGCTTAATGAGGCCAGCTTGAGTCCTGCG
GACGCACATGCTCATGCCAACGCCACCACGCCCACGCACAGCAAGGCGGC
GATGGCCAGTGCCACCACAATGCTGACCACAAAAACGCCGTTTTCCATCG
AGCACATATTGTTTCAAAACTTAAATAGTGCCAGCAATAACAATAATAGT
AGTGATACCAACGGCATCGCCGCAAACACCAACAACTACGCGCCAAAGAG
CAGCAGAAACGCGGTGAAAAGTGCCAGAAGCGCATTTGCCCACGACAATA
ATCCGCACAAACATCCGTCGCAACATTCGCATCCGCCGCAGTCACATCCG
CCGGCGTCCGCATCCGCATCCGCGACGGCTACTGCCCGCAGCAACCAGGC
TGCGTCGGGTTACGCTGGCGAGGATTACGGCAAGTCCATGCACAGCACTC
CACGGTCCAACCACCACTCGCGACACGGAACTTCCCACTACAACGGAGAT
CAGATTTCGCAGCAGTTGGGATCTGGAGCAGCACAACATCCGCCGGTGCC
CACGACTCAACCTCAACCTCCGCCTCCGCCGCCCCTGAATGGAGGTAGTG
GTGCATCCAATGGAGTACTCTATCCGAATGCACCCTACACCGATCACGGA
TTTCTTCAAATGACCCTCGGATATCTCTCGCCGTCGTCGGGCACCTACAA
GTCCGTGGATCCCTATTTTCTATCACAAGCCAGCCTGTTCGGGGGAGCGC
CCTTCTTCGAGCGCCTGGCTGTGTGCCGGAACTGGCCCTCGGACTGGGAA
TGGGCGTGAATGCCCTGCGCCACTGCCGCCGGAGGAAGGCTCGCACGGTG
TTCAGTGATCCGCAGCTGTCCGGTCTGGAAAGCGGTTCGAGGGACAGCGA
TACCTGTTCACGCCGGAGCGTGTGGAGCTGGCCACGGCCTTGGGACTCAG
CGAGACGCAGGTGAAAACTTGGTTCCGAACCCGCGCATGAGCCACAAAAG
CACTGCCCCGGCCGACAATGCAATGAAGCCGTCAACTTTCTC
FMO06715.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:11:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bsh-RC | 1503 | CG10604-RC | 139..1172 | 15..1038 | 4760 | 97.9 | Plus |
| bsh-RB | 2012 | CG10604-RB | 139..1172 | 15..1038 | 4760 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:11:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19768485..19768929 | 456..15 | 2145 | 99.3 | Minus |
| 2L | 23513712 | 2L | 19767740..19768015 | 729..454 | 1380 | 100 | Minus |
| 2L | 23513712 | 2L | 19767078..19767352 | 999..728 | 1105 | 96 | Minus |
Blast to na_te.dros performed 2014-11-28 19:11:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6753..6944 | 174..367 | 135 | 57.8 | Plus |
FMO06715.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:48 Download gff for
FMO06715.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bsh-RB | 132..1120 | 7..990 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:32:20 Download gff for
FMO06715.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bsh-RB | 132..1120 | 7..990 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:02:24 Download gff for
FMO06715.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bsh-RB | 132..1120 | 7..990 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:02:24 Download gff for
FMO06715.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19767087..19767350 | 730..990 | 96 | <- | Minus |
| 2L | 19767740..19768014 | 455..729 | 100 | <- | Minus |
| 2L | 19768487..19768936 | 7..454 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:48 Download gff for
FMO06715.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19767087..19767350 | 730..990 | 96 | <- | Minus |
| arm_2L | 19767740..19768014 | 455..729 | 100 | <- | Minus |
| arm_2L | 19768487..19768936 | 7..454 | 98 | | Minus |
