FMO06717.5prime Sequence
962 bp (874 high quality bases) assembled on 2008-10-01
> FMO06717.5prime
TTTATCAGTCGACATGTTTCCCCTGCGTCCTGATCAGCCGCAGGCGGTTG
CCTCGTTTCCGCTCCACAGCTCCTTGAGCATCGAAGAGTTCAACAATGTG
AAGTGGGAGGATATAAATGATTGCAATAACAATTGCATTCGGGAGGAGCC
AATTCTAAGGCCCAAAACCAATCGCCATATTTTAAGGCGCACTCGCAGCT
TGAATGCACCCTCGCCTGTCCAGCAGTTCGGACCATGTGGTCGCATCATG
AAAAACTCCGCCATGGTGATGCAGATCCAGGATCCGGCTAGTCAACGTCT
CACCTGGTACAAGCCACCACTCACCGTGCTCGTGATCAAGAAGGTCAGCG
ATGCCTCGGTGCTGGCACCGTTCGTCTACCTGGTGGACTGGCTGCTGCAG
GAGAAGAACATGGTCGTTTGGGTGGAGTCGGCCGTGCTGGAGGATGTCCA
GCTCAACGAAAATGTGCGATTCAAGGCCATTCGGGATAAGCTAGTGACTT
TCAAAGATGGCCGAAATGATCTGACCGATCGCATAGACTTTATAGTTTGC
CTGGGTGGCGATGGCACCCTGCTGTATGCTTCGCTGCTCTTCCAGCAATC
TGTGCCCCCCCGTCATGGCCTTCCATTTGGGCTCCCTCGGCTTTCTCACA
CCCTTTCCGTTTTCGATAACTTTGAGGAGCAGCTGACCAGCGTCCTGGAG
GGTCACGCTGCCCTAACGCTTTCGCATTCGTTTGCGCTGTGTTATGCATC
GCAGGAGCGATAGGAAACACGAGGCTAAGACTCTGGAGGCAGATCTAGAT
GGTGAGGCGCGACCTGCAGCCAACAGCATACTGGTGCTCAACGAAGTGGT
CATTGATCGGGTCCATCGCCGTATCTGACAATAATGATCTGTTTCTGGAC
GGAAGTATTATCACGTCGAGTGAAGGCGACGGTCTGATCGTATCGAACGC
CCACGGGAAACA
FMO06717.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:20:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33156-RB | 1824 | CG33156-RB | 100..1042 | 14..959 | 4415 | 98.4 | Plus |
| CG33156-RF | 1795 | CG33156-RF | 242..1013 | 185..959 | 3560 | 98.1 | Plus |
| CG33156-RA | 1874 | CG33156-RA | 322..1092 | 186..959 | 3555 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:20:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13549085..13549536 | 959..505 | 1760 | 95.4 | Minus |
| 2R | 25286936 | 2R | 13549599..13549918 | 504..185 | 1600 | 100 | Minus |
| 2R | 25286936 | 2R | 13549986..13550159 | 187..14 | 870 | 100 | Minus |
| 2R | 25286936 | 2R | 13539104..13539359 | 435..177 | 600 | 83 | Minus |
| 2R | 25286936 | 2R | 13538643..13538855 | 720..505 | 455 | 82.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:20:28 has no hits.
FMO06717.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:43 Download gff for
FMO06717.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33156-RB | 100..1044 | 14..961 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:32:17 Download gff for
FMO06717.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33156-RB | 117..1061 | 14..961 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:11:39 Download gff for
FMO06717.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33156-RB | 100..1044 | 14..961 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:11:39 Download gff for
FMO06717.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13549987..13550159 | 14..186 | 100 | | Minus |
| 2R | 13549083..13549536 | 505..961 | 96 | <- | Minus |
| 2R | 13549599..13549916 | 187..504 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:43 Download gff for
FMO06717.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9436588..9437041 | 505..961 | 96 | <- | Minus |
| arm_2R | 9437104..9437421 | 187..504 | 100 | <- | Minus |
| arm_2R | 9437492..9437664 | 14..186 | 100 | | Minus |
