FMO06718.5prime Sequence
437 bp (-81 high quality bases) assembled on 2008-10-01
> FMO06718.5prime
TTTATCAGTCGACATGGCGGACGCTGCACCACCTGGCGATGCACCACCCA
ATGCCGGAGCCCCGGCCGGAGAGGGCGGCGATGGCGAGATTGTGGGCGGA
CCACACAATCCGCAACAGATCGCGGCACAGATGCGTCTGCAGCACACGCT
TGCGCTGGTCGATGAGGTCGTGGACATCATGCGCACGAACGTGGAGAATG
TGCTGGAGCGCGACAGCAAGCTGTCGGAGCTGGACGACCGTGCCTATGCC
TTGCAGCAGGGTGCCTCGCAGTTTGAGCAGCAGGCGGGCAAGCTCAAGAG
GAAATTCTGGCTTCAGAACTTTAAGATGATGATCATCATGGGCGTGATTG
GCCTGGTTGTCATGGGCATTATTGCAAATAAACTTGGACTCATAGGCGGG
GAGCAGCCGCCACAGTACCAGTATCCCCCACAGTACA
FMO06718.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nSyb-RF | 1109 | CG17248-RF | 483..907 | 13..437 | 1960 | 97.4 | Plus |
| nSyb-RA | 1387 | CG17248-RA | 480..904 | 13..437 | 1960 | 97.4 | Plus |
| nSyb-RG | 3027 | CG17248-RG | 559..980 | 16..437 | 1945 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1635301..1635461 | 325..165 | 760 | 98.1 | Minus |
| 3L | 28110227 | 3L | 1635532..1635684 | 168..16 | 660 | 95.4 | Minus |
| 3L | 28110227 | 3L | 1632395..1632454 | 437..378 | 300 | 100 | Minus |
| 3L | 28110227 | 3L | 1635182..1635239 | 381..324 | 260 | 96.6 | Minus |
| 2R | 25286936 | 2R | 10250908..10251069 | 348..187 | 225 | 75.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:40:03 has no hits.
FMO06718.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:34:34 Download gff for
FMO06718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| n-syb-RA | 474..903 | 6..436 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:32:14 Download gff for
FMO06718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| n-syb-RA | 489..918 | 6..436 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:24:54 Download gff for
FMO06718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nSyb-RA | 474..903 | 6..436 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:24:54 Download gff for
FMO06718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1632396..1632454 | 378..436 | 100 | <- | Minus |
| 3L | 1635186..1635237 | 326..377 | 98 | <- | Minus |
| 3L | 1635301..1635459 | 167..325 | 98 | <- | Minus |
| 3L | 1635534..1635691 | 5..166 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:34:34 Download gff for
FMO06718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1632396..1632454 | 378..436 | 100 | <- | Minus |
| arm_3L | 1635186..1635237 | 326..377 | 98 | <- | Minus |
| arm_3L | 1635301..1635459 | 167..325 | 98 | <- | Minus |
| arm_3L | 1635534..1635691 | 5..166 | 92 | | Minus |
