FMO06720.5prime Sequence
600 bp (600 high quality bases) assembled on 2008-10-01
> FMO06720.5prime
CTTTATCAGTCGACATGAGCTGCGGAATCTCCATGGTTAAATATATCCTA
TTTATATTTAATTTGCTCTGTTCGATATGCGGCATATTGCTGATCGTATT
CGGAGCTCTGCTGTTCAGCAAAGTCCGTAACATGGATGACTTCGCGGAAG
CCCTGCGAACCCAGCAGGTGCCCGTAACGATGATCATCCTGGGCACCATC
ATCCTGCTGATTTCCTGGTTCGGCTGCTGCGGAGCCATTCGGGAATCCTA
CTGCATGTCCATGACGTACTCGATCTTGCTGTTCGTCCTGATGATTGGCC
AACTGGCTTTGGTGATCTACATGTGGGTGCAGAAGGACAAGTACCTGGAG
ATCATGGGCGACGTGGTCGAGAAGGCCTGGAACCATCGCACCAGTCGTTC
CGACTACATGGACGCGATTCAGATCAGCATGAAATGCTGCGGACGCAGTG
GCTACACCGACTACGCCTACCAGGGCAAGTTCCCTCCCTCCTGCTGCAGC
GACACCAACAACTGCCGCTGGGAGACCGTCTACCGGCGGGGATGCAAGGT
CACCTTCGTTGAGTTCTGGGACAGGAACAGCGACATCATCAAGTATGCCG
FMO06720.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:08:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp42Ea-RC | 1107 | CG18817-RC | 144..729 | 15..600 | 2930 | 100 | Plus |
| Tsp42Ea-RB | 1113 | CG18817-RB | 150..735 | 15..600 | 2930 | 100 | Plus |
| Tsp42Ea-RA | 1118 | CG18817-RA | 155..740 | 15..600 | 2930 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:08:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6996675..6996867 | 74..266 | 965 | 100 | Plus |
| 2R | 25286936 | 2R | 7002964..7003156 | 74..266 | 965 | 100 | Plus |
| 2R | 25286936 | 2R | 6997159..6997330 | 429..600 | 860 | 100 | Plus |
| 2R | 25286936 | 2R | 7003448..7003619 | 429..600 | 860 | 100 | Plus |
| 2R | 25286936 | 2R | 6996930..6997092 | 266..428 | 815 | 100 | Plus |
| 2R | 25286936 | 2R | 7003219..7003381 | 266..428 | 815 | 100 | Plus |
| 2R | 25286936 | 2R | 6994425..6994484 | 15..74 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:08:39 has no hits.
FMO06720.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:48 Download gff for
FMO06720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42Ea-RA | 146..740 | 6..600 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:28:49 Download gff for
FMO06720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42Ea-RB | 146..740 | 6..600 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:00:51 Download gff for
FMO06720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42Ea-RA | 146..740 | 6..600 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:00:51 Download gff for
FMO06720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6996676..6996867 | 75..266 | 100 | -> | Plus |
| 2R | 6996931..6997092 | 267..428 | 100 | -> | Plus |
| 2R | 6997159..6997330 | 429..600 | 100 | | Plus |
| 2R | 6994416..6994484 | 6..74 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:48 Download gff for
FMO06720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2881921..2881989 | 6..74 | 95 | -> | Plus |
| arm_2R | 2884181..2884372 | 75..266 | 100 | -> | Plus |
| arm_2R | 2884436..2884597 | 267..428 | 100 | -> | Plus |
| arm_2R | 2884664..2884835 | 429..600 | 100 | | Plus |
