FMO06725.5prime Sequence
651 bp (616 high quality bases) assembled on 2008-10-01
> FMO06725.5prime
CTTTTACGAACCTATCAGTCGACATGTTGAAGTCGAAGCAGTTGCTCCAA
CAGTTTTCCAAAGAGTACGCTAAATATACGCCGACCAACTTCAAGCTAAA
GCGGGCCCTGGTCGTCACCAAGCTGTCCCGCTATGAGTTCGAGCAGCTAC
GCCACCCGGAACTGTCTCCGGATCAGCTCCAGCAAAAGCTCCGTGACCGG
GGCACCGACGTGGAGATGGTCCTCCATCTGCACAAGGTGCACAAGGACTT
CGAGCGGCGGGTCGTGCAGAGCTTCCAGGACGTCGGCTGCGAGGTGAAGT
TGTCCAGCAGACTTGAATTTAGAAGCTCGTTGAGCAAGGACGTCATGAGC
TGGGCGGACGTCATCGTGCCGGTGGGCGGCGATGGCACTTTCCTTCTCTC
CGCCGGACGCGCCAGTCCGCTCTTCGCGCTCAGCCAGCAAAAGACGCCGA
TCGTGGGCTTCAACTCGGATCCGCTTCACTCGGAGGGCCGACTCATGCTG
CCCAAGCACTACTCGGATAATCCGGCCGACGCCGTTTCCCGCATCAAGAG
CGGAGATTTCAAGTGGATGCATCGCTCGAGGGTGCGGACTACGATGCTTG
GTAGCAACGGCAATATTTCGGAGCCGACTGACCTTTTCCGCCACACGGAG
G
FMO06725.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8080-RA | 1808 | CG8080-RA | 422..1050 | 23..651 | 3115 | 99.7 | Plus |
| CG8080-RB | 1708 | CG8080-RB | 334..950 | 23..651 | 2925 | 97.8 | Plus |
| CG8080-RE | 1402 | CG8080-RE | 57..644 | 64..651 | 2910 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9091407..9091655 | 310..62 | 1245 | 100 | Minus |
| 2R | 25286936 | 2R | 9090810..9091056 | 552..306 | 1220 | 99.6 | Minus |
| 2R | 25286936 | 2R | 9090650..9090749 | 651..552 | 485 | 99 | Minus |
| 2R | 25286936 | 2R | 9092432..9092472 | 63..23 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:39:50 has no hits.
FMO06725.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:34:22 Download gff for
FMO06725.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8080-RA | 422..1050 | 23..651 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:28:44 Download gff for
FMO06725.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8080-RA | 498..1126 | 23..651 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:24:48 Download gff for
FMO06725.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8080-RA | 422..1050 | 23..651 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:24:48 Download gff for
FMO06725.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9090650..9090749 | 552..651 | 99 | <- | Minus |
| 2R | 9090811..9091051 | 311..551 | 99 | <- | Minus |
| 2R | 9091407..9091653 | 64..310 | 100 | <- | Minus |
| 2R | 9092432..9092472 | 23..63 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:34:22 Download gff for
FMO06725.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4978155..4978254 | 552..651 | 99 | <- | Minus |
| arm_2R | 4978316..4978556 | 311..551 | 99 | <- | Minus |
| arm_2R | 4978912..4979158 | 64..310 | 100 | <- | Minus |
| arm_2R | 4979937..4979977 | 23..63 | 100 | | Minus |
