FMO06727.5prime Sequence
623 bp (-60 high quality bases) assembled on 2008-10-01
> FMO06727.5prime
CCTTATCAGTCGACATGGCTGATCGGGCTATCAAGCTGCTGGTGATCGGG
GAAAGCGGCGTGGGCAAGTCCAGTTTGATACGTCGCTTCGTGGAGAACAA
GTTCGACCAGAACCATGACGTCACGATTGGCATGGACTTCAAGAGCAAAG
TGATGCAGGTGGACGGCATAGACTACAAGGTGGCCCTGTGGGATACGGCG
GGCGCCGAGAGATTCCGCAGCCTGACGCCCAGTTTCTATCGGAAGGCTCT
GGGCGCCATTCTAGTGTACGACATCACCAGCAGGGACAGCCTGGTCAAGC
TGGAAACCTGGCTGGCTGAACTGGATAGCTACAGCGACAATCCCAACATT
GCCATCATTGTGGTAGGCAACAAGATCGACGAGGAGCGAGTTGTGGATCG
CGAGGAGGGTCGAAAGTTTGCCAGGAAGCACAGGGCGCTCTTCATCGAGA
CCTCAGCCAAATGCGATCAGTTCGTCAGCGATGTGTTCAAAGATGTGGTG
GAGAAGATCGTCTCCTCCGAATACTTCAACAATGGCAATGCCTCCGCCGG
TCTGGACATCGCCAGCGATCGGGATCTGGAGGCAAGCGCGTCTACGTGTT
ACTGTGCAAGCTTTCTAGACCAT
FMO06727.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:51:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab18-RA | 833 | CG3129-RA | 152..742 | 15..605 | 2955 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:51:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5671081..5671515 | 506..72 | 2175 | 100 | Minus |
| X | 23542271 | X | 5670918..5671018 | 605..505 | 505 | 100 | Minus |
| X | 23542271 | X | 5671603..5671661 | 73..15 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:51:15 has no hits.
FMO06727.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:41 Download gff for
FMO06727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab18-RA | 146..742 | 7..605 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:28:42 Download gff for
FMO06727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab-RP4-RA | 143..739 | 7..605 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:08 Download gff for
FMO06727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab18-RA | 146..742 | 7..605 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:08 Download gff for
FMO06727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5670918..5671016 | 507..605 | 100 | <- | Minus |
| X | 5671081..5671513 | 74..506 | 100 | <- | Minus |
| X | 5671603..5671665 | 7..73 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:41 Download gff for
FMO06727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5564951..5565049 | 507..605 | 100 | <- | Minus |
| arm_X | 5565114..5565546 | 74..506 | 100 | <- | Minus |
| arm_X | 5565636..5565698 | 7..73 | 94 | | Minus |
