FMO06728.5prime Sequence
1114 bp (902 high quality bases) assembled on 2008-10-01
> FMO06728.5prime
CAGTCGACATGACGGACTACACGGAATACGTGGAAACCGCCTGGAAGTAT
GCGGAATGGCTACCTTACCTCCTCGTCTCCTACGTGGTAGTCACCCTGCT
GCCGAAGTCCCTCATCCGGATGAAACGCTTCGCGGACGCGGACTACGAGG
CCAACAGGAACATGTTTCACCGCTGCTACGGCCCAGAGCTATGCTGCCAC
GTTCTGGGCCAGGAGCAGGTCGCCGGAAAGGTGAAGCCCAAGGCCAGGAA
GCCAGTGACCCGGGTGTATCCCAAGCGTCAGCAGGTGGCGCCCAAAGCGG
AGCTACCACCTCCTAGTCCAGCGCCCGTTAAGCGGAGCAACGTCACCAAG
ATAGCCAGGATGTTTGAGACGGGCAACACGCGCCAGGTGAGCCGCGTTGC
GCCCATAACGCTTCCCGAGATCAGGATGTTCGGAGCAAGCGATGAGTCCA
GAGACTCGACGCCCTGCGTCTCGCGGAAAACCAGCATCGCCAGTCAGCTC
TCGGCTCAGCTGCAGCACATCGAGCAGACGATGCACCTGTGGCAGGAACT
GGAGGAGGAGCCCTCCAAGAAGGCATCCAGCCACAACGATTGGGAGCCCA
TGGCAGTGCCGGTTCCAAGACGAACCCGTGGTACCTCTGCCACGCCCCTC
CACGGCCTCCCCGCTCTCCAGTTCCCCGGAACTGGAGCACTCCCGATCTC
CGGTTCTCCTGAGGAAGCCGCCTTCCCTGTGCCTGCAGACCAGCATGGAG
GATATATTCCAGGTGATCGCCCCGGAGTGCCGAGGAGCCGGAAGACTGCC
CGGGACTGCCAGTGCCTCTCGCTAGGTGACCAGCATCGATGATATTCTCT
TCGAGCGGAGGTTCTCACGCCCCCTGTCCGCCTACTCCATCACCGATCTC
CTCACAAAGAGCAGGCTCGTGTATCGAAGAGACCACGTTAATCACGAAAC
CAGAGCAAGCTTTTCTAGACATTCGTTTGGCGCGCGGCCCAGGTAATGGT
CATAATCTATCATATCATAATCATATTCCAACTAGCCTAGGAATCTGTCA
TGACTATGCTTGGAATTCCCACAATAAAACGCCGGGCGCAACGAGCGTTC
TGACAAATCCAAAT
FMO06728.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1146-RD | 1882 | CG1146-RD | 391..1336 | 8..954 | 4500 | 98.7 | Plus |
| CG1146-RA | 1903 | CG1146-RA | 412..1357 | 8..954 | 4500 | 98.7 | Plus |
| CG1146-RC | 1721 | CG1146-RC | 230..1175 | 8..954 | 4500 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2491122..2492067 | 8..954 | 4325 | 98.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:39:47 has no hits.
FMO06728.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:34:19 Download gff for
FMO06728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1146-RB | 342..1294 | 1..954 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:28:39 Download gff for
FMO06728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1146-RA | 398..1350 | 1..954 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:24:46 Download gff for
FMO06728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1146-RC | 223..1175 | 1..954 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:24:46 Download gff for
FMO06728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2491115..2492067 | 1..954 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:34:19 Download gff for
FMO06728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2491115..2492067 | 1..954 | 98 | | Plus |
