FMO06733.5prime Sequence
1112 bp (921 high quality bases) assembled on 2008-10-01
> FMO06733.5prime
CAGTCGACATGACCATCCAAGGACTGAAGTGTGACCTCAGCCCGACGGTG
ACCACTTGTCTGCAGCTGAAGGACTGCGTCCGTCCGGACTGCTGTCCCAT
CCGGGACCCCATTCCCTACGATGCCGAGTGCTTCGTTAGGGACATTGGCC
AGGAGCTGGACAAACTGACGCGCCGACACGAGCGCATGTTCGTCAAGCGG
CGGCGTCTGATGGAAATGGCCATACCCAGGCGACGCACCTGCCGCTTTGT
GCCGAAATGCGCCTGCTCATTTCCCAAGTCCATCGAGATGGTGCGACCAT
GTGACGCCCAGAATCACACACGCACCGAGCAACTAGCTCTGCCCACGGTC
CGTCGATTGCTTCACAGGCGGCGAACGGCCATTCTGGCGGGCGACTCAAT
TGGGGAGTCCATACTGAACAGATGGCTTCGCTACAGCTATCTATCGCTGT
ACAGTCGTCTCACGAATATCCAGCCGTTGGTTAAGCCGAAGAAAAAGAAG
AAGAAGACGGAGAAGCAGCTGGCTAAGCACGAGAAGTACATCGAAAAGTT
GGCGAAACCAAAGAAAGCACCAAAGGTCCCGAAACCGGATCGTGGAGCTG
GGGAGTTCGATCCCGTGCGTCTCAATCAGCTGGCCAGTCCCAAGGCCTAT
TTGGAGGAGATCAAAACCCAAGTGGGAGCTGACCTCCCAGATGAAGGACT
ACAAGGCGACCAAGCGGATCAAGCAAATATCGCAGCCCGTCGTGCGCGAT
AATGTCCACATCAACGAGATTCCGGAGAAAGTCTCGCCCAATGCCCTTCG
CTACAGCCGAGTGCCCGCATCAAGTGAGATGTCCGAGCCACTTACCACGC
GCGATGCAACCAAGGACTGGCGGATGTCAAGGAGAATCCATTCGGTATCG
CGCCCAACGCGCTCAATACAGGCGAGCACGCGGATCAGGAGCTGGCCGGA
GCCCAGGAGTCAGAACACGCATATCCGGAGATCCGTTGCCATATCGCGGC
GGTCTGAGCAAGCCTCGCCACGCTCATCGAGTGGCAGGCCAGGTGGAACA
AGCCTTCAGACATCGGTTTGGCGCGCGGGACCAGGTAAGGGCTATATCTA
ACCTATCTAATC
FMO06733.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:11:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6332-RA | 1316 | CG6332-RA | 132..1170 | 9..1032 | 4660 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:11:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22014828..22015307 | 9..488 | 2400 | 100 | Plus |
| 3R | 32079331 | 3R | 22015540..22015757 | 587..805 | 1015 | 98.6 | Plus |
| 3R | 32079331 | 3R | 22015380..22015480 | 488..588 | 505 | 100 | Plus |
| 3R | 32079331 | 3R | 22015827..22016002 | 808..978 | 465 | 92.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:11:19 has no hits.
FMO06733.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:43 Download gff for
FMO06733.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6332-RA | 126..1180 | 1..1040 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:31:56 Download gff for
FMO06733.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6332-RA | 126..1180 | 1..1040 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:02:20 Download gff for
FMO06733.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6332-RA | 126..1180 | 1..1040 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:02:20 Download gff for
FMO06733.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22014822..22015306 | 1..487 | 99 | -> | Plus |
| 3R | 22015380..22015479 | 488..587 | 100 | -> | Plus |
| 3R | 22015541..22015760 | 588..807 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:43 Download gff for
FMO06733.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17841263..17841482 | 588..807 | 98 | -> | Plus |
| arm_3R | 17840544..17841028 | 1..487 | 99 | -> | Plus |
| arm_3R | 17841102..17841201 | 488..587 | 100 | -> | Plus |
