FMO06738.5prime Sequence
962 bp (962 high quality bases) assembled on 2008-10-01
> FMO06738.5prime
CAGTCGACATGTCGGGAATCGCTGCCAAAAAGATTGCCGAAGCGGAGGAC
CTGGTGAAGCAGGCCGAGAAGAGCTTGAAGTTGTCCATGCTGAAATGGGT
TCCTGATTACGATAGTGCTGCGGATGAGTATTCCAAAGCTGCCACTGCAT
ATCGAATAGCTAAAAGTTATGATAAGAGCAAGGAGTGTTTTCTGAAGGCA
ATCGACGCCTATAAAAACAACAAGTCTTGGTTCCATGCTGCAAAGGCATA
CGAACAGATCATTTTGCTGTCAAAGGATGCCGATAAGCTACACGAAGTTG
AGGAATACGCCAACAAATCGGCGAGTTTGTATCAACAGCACGGTTCCCCA
GAGGCAGCCGCATCCGCCTTGGATAAAGCCGCCAAGTTAACTGAATCCAA
GCATCCTGACATGGCTTTGCGCTTCTATCAGCATGCTCTAGAAGTCATAA
TGATCGAGGATTCCGTCCGTCAAGCAGCCGAGTATGCATCAAAAGTTTCC
AGGATACTGGTCAAACTAAGGAGGTACGACGAAGCCACGAATGCGCTCAA
AAAGGAGATCAGCTTGAATCAGCAAACGGAATCTTACGGACAAATTGGAC
GCCTAGTTGTGGCCTTGGTGATGGTCCAACTGGCTCGCGGGGATTCCGTG
GAAGCCGAAAAGACCTTCAGGGAGTGGGGAAACTGCTGCGAGCCAGAGGA
AGTGTCCACACTGCAGACCCTTCTGCAAGCCTTCGATGACGAGGATCCCG
AGTTAGCTGCTAGGATGCTGGCATCCCCATTCATACGACATATGGATGTT
GAGTACGCTATTCTATCTAAAAACATTTCACTACCCTCAAGGTATACAGG
ATGGAGAAGAAGGCTGGCGACACTGCTGCTGAAACCCAACGACGCCGAAG
GACGAAAGTGGCTTGTGCGGCAAGCTTTCTAGACCATTCGTTTGGCGGCG
CGGGCCAGGGTA
FMO06738.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gammaSnap1-RA | 1117 | CG3988-RA | 71..976 | 9..918 | 4405 | 99.2 | Plus |
sei-RC | 3197 | CG3182-RC | 137..384 | 769..522 | 1240 | 100 | Minus |
gammaSnap2-RA | 1002 | CG6208-RA | 119..812 | 128..821 | 725 | 74 | Plus |
sei-RC | 3197 | CG3182-RC | 446..520 | 526..452 | 375 | 100 | Minus |
sei-RC | 3197 | CG3182-RC | 94..138 | 881..836 | 190 | 95.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24047504..24047861 | 881..522 | 1670 | 98.9 | Minus |
2R | 25286936 | 2R | 24048066..24048262 | 452..256 | 985 | 100 | Minus |
3R | 32079331 | 3R | 10120589..10121282 | 821..128 | 725 | 73.6 | Minus |
2R | 25286936 | 2R | 24048335..24048451 | 257..141 | 585 | 100 | Minus |
2R | 25286936 | 2R | 24047923..24047997 | 526..452 | 375 | 100 | Minus |
2R | 25286936 | 2R | 24048639..24048708 | 141..72 | 350 | 100 | Minus |
2R | 25286936 | 2R | 24048769..24048833 | 73..9 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:32:16 has no hits.
FMO06738.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:45:52 Download gff for
FMO06738.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gammaSnap-RA | 64..979 | 3..923 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:28:29 Download gff for
FMO06738.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gammaSnap-RA | 50..965 | 3..923 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:44 Download gff for
FMO06738.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gammaSnap1-RA | 64..979 | 3..923 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:44 Download gff for
FMO06738.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24048639..24048706 | 74..141 | 100 | <- | Minus |
2R | 24048769..24048840 | 3..73 | 95 | | Minus |
2R | 24048066..24048260 | 258..452 | 100 | <- | Minus |
2R | 24047505..24047859 | 524..880 | 98 | <- | Minus |
2R | 24047926..24047996 | 453..523 | 100 | <- | Minus |
2R | 24048335..24048450 | 142..257 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:45:52 Download gff for
FMO06738.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19936292..19936363 | 3..73 | 95 | | Minus |
arm_2R | 19935028..19935382 | 524..880 | 98 | <- | Minus |
arm_2R | 19935449..19935519 | 453..523 | 100 | <- | Minus |
arm_2R | 19935589..19935783 | 258..452 | 100 | <- | Minus |
arm_2R | 19935858..19935973 | 142..257 | 100 | <- | Minus |
arm_2R | 19936162..19936229 | 74..141 | 100 | <- | Minus |