Clone FMO06738 Report

Search the DGRC for FMO06738

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:67
Well:38
Vector:pMK33-CFH-BD
Associated Gene/TranscriptgammaSnap-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO06738.5prime Sequence

962 bp (962 high quality bases) assembled on 2008-10-01

> FMO06738.5prime
CAGTCGACATGTCGGGAATCGCTGCCAAAAAGATTGCCGAAGCGGAGGAC
CTGGTGAAGCAGGCCGAGAAGAGCTTGAAGTTGTCCATGCTGAAATGGGT
TCCTGATTACGATAGTGCTGCGGATGAGTATTCCAAAGCTGCCACTGCAT
ATCGAATAGCTAAAAGTTATGATAAGAGCAAGGAGTGTTTTCTGAAGGCA
ATCGACGCCTATAAAAACAACAAGTCTTGGTTCCATGCTGCAAAGGCATA
CGAACAGATCATTTTGCTGTCAAAGGATGCCGATAAGCTACACGAAGTTG
AGGAATACGCCAACAAATCGGCGAGTTTGTATCAACAGCACGGTTCCCCA
GAGGCAGCCGCATCCGCCTTGGATAAAGCCGCCAAGTTAACTGAATCCAA
GCATCCTGACATGGCTTTGCGCTTCTATCAGCATGCTCTAGAAGTCATAA
TGATCGAGGATTCCGTCCGTCAAGCAGCCGAGTATGCATCAAAAGTTTCC
AGGATACTGGTCAAACTAAGGAGGTACGACGAAGCCACGAATGCGCTCAA
AAAGGAGATCAGCTTGAATCAGCAAACGGAATCTTACGGACAAATTGGAC
GCCTAGTTGTGGCCTTGGTGATGGTCCAACTGGCTCGCGGGGATTCCGTG
GAAGCCGAAAAGACCTTCAGGGAGTGGGGAAACTGCTGCGAGCCAGAGGA
AGTGTCCACACTGCAGACCCTTCTGCAAGCCTTCGATGACGAGGATCCCG
AGTTAGCTGCTAGGATGCTGGCATCCCCATTCATACGACATATGGATGTT
GAGTACGCTATTCTATCTAAAAACATTTCACTACCCTCAAGGTATACAGG
ATGGAGAAGAAGGCTGGCGACACTGCTGCTGAAACCCAACGACGCCGAAG
GACGAAAGTGGCTTGTGCGGCAAGCTTTCTAGACCATTCGTTTGGCGGCG
CGGGCCAGGGTA

FMO06738.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:17
Subject Length Description Subject Range Query Range Score Percent Strand
gammaSnap1-RA 1117 CG3988-RA 71..976 9..918 4405 99.2 Plus
sei-RC 3197 CG3182-RC 137..384 769..522 1240 100 Minus
gammaSnap2-RA 1002 CG6208-RA 119..812 128..821 725 74 Plus
sei-RC 3197 CG3182-RC 446..520 526..452 375 100 Minus
sei-RC 3197 CG3182-RC 94..138 881..836 190 95.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24047504..24047861 881..522 1670 98.9 Minus
2R 25286936 2R 24048066..24048262 452..256 985 100 Minus
3R 32079331 3R 10120589..10121282 821..128 725 73.6 Minus
2R 25286936 2R 24048335..24048451 257..141 585 100 Minus
2R 25286936 2R 24047923..24047997 526..452 375 100 Minus
2R 25286936 2R 24048639..24048708 141..72 350 100 Minus
2R 25286936 2R 24048769..24048833 73..9 325 100 Minus
Blast to na_te.dros performed on 2014-11-28 20:32:16 has no hits.

FMO06738.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:45:52 Download gff for FMO06738.5prime
Subject Subject Range Query Range Percent Splice Strand
gammaSnap-RA 64..979 3..923 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:28:29 Download gff for FMO06738.5prime
Subject Subject Range Query Range Percent Splice Strand
gammaSnap-RA 50..965 3..923 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:44 Download gff for FMO06738.5prime
Subject Subject Range Query Range Percent Splice Strand
gammaSnap1-RA 64..979 3..923 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:44 Download gff for FMO06738.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24048639..24048706 74..141 100 <- Minus
2R 24048769..24048840 3..73 95   Minus
2R 24048066..24048260 258..452 100 <- Minus
2R 24047505..24047859 524..880 98 <- Minus
2R 24047926..24047996 453..523 100 <- Minus
2R 24048335..24048450 142..257 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:45:52 Download gff for FMO06738.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19936292..19936363 3..73 95   Minus
arm_2R 19935028..19935382 524..880 98 <- Minus
arm_2R 19935449..19935519 453..523 100 <- Minus
arm_2R 19935589..19935783 258..452 100 <- Minus
arm_2R 19935858..19935973 142..257 100 <- Minus
arm_2R 19936162..19936229 74..141 100 <- Minus