FMO06745.5prime Sequence
645 bp (-85 high quality bases) assembled on 2008-10-01
> FMO06745.5prime
TGTTATCAGTCGACATGTCTACGAGTTCCATGGAAAAACACCTTTTCAAT
CTAAAGTTTGCCGTAAAGGAATTGGAACGAAACTCAAAGAAATGTGAGAA
GGAGGAGAAGCTGGAGAAGGCAAAGGCCAAGAAGGCGATTCAGAAGGGCA
ACATGGACGTGGCCCGCATCCACGCAGAGAATGCGATCCGCCAGAAGAAC
CAGGCGGTTAACTACCTCAGGATGAGTGCCCGAGTGGATGCAGTGGCCAG
TAGGGTTCAGTCCGCACTCACCACCCGCAAGGTCACCGGCTCCATGGCCG
GCGTGGTCAAGGCCATGGATGCAGCTATGAAGGGTATGAACCTGGAGAAG
ATTTCCTCCCTGATGGAGAAGTTTGAATCGCAGTTCGAAGACCTGGACGT
CCAGAGCTCGGTAATGGAGGGCACCATGTCCGACACGGTAACCACCTCGG
TGCCTCAGGGAGATGTCGACAATCTGCTCCAGCAAGTGGCCGACGAGGCT
GGCCTCGAACTCAACATGGAGCTGCCCAGCGGAGTTCAGAGCCAATCCGT
TGGAGCCTCGACAGCAGTGTCCCAAGAGCAAGACGAGCTCACCCAGCGAC
TGGCACGTCTCCGCCAGGCTGAAGCAAGCTTTCTAGACCATTCGT
FMO06745.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Chmp1-RB | 1096 | CG4108-RB | 157..769 | 11..623 | 3065 | 100 | Plus |
| Chmp1-RA | 847 | CG4108-RA | 157..769 | 11..623 | 3065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18683222..18683808 | 623..37 | 2935 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:28:58 has no hits.
FMO06745.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:32:04 Download gff for
FMO06745.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chmp1-RA | 157..772 | 11..627 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:28:18 Download gff for
FMO06745.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chmp1-RA | 155..770 | 11..627 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:50 Download gff for
FMO06745.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chmp1-RA | 157..772 | 11..627 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:50 Download gff for
FMO06745.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18683218..18683808 | 37..627 | 99 | <- | Minus |
| 3L | 18683880..18683905 | 11..36 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:32:04 Download gff for
FMO06745.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18676318..18676908 | 37..627 | 99 | <- | Minus |
| arm_3L | 18676980..18677005 | 11..36 | 100 | | Minus |
