FMO06747.5prime Sequence
1154 bp (942 high quality bases) assembled on 2008-09-29
> FMO06747.5prime
CAGTCGACATGCAGAGTGTTCTCAACACCGTCAAGGGCACAGCGCTCAAT
GTGGCCGAATATCTGACGCCCGTTTTGAAGGAATCGAAATTCCGTGAGAC
AGGTGTTCTCACTCCGGAAGAATTCGTGGCCGCCGGTGATCACCTGGTGC
ACCATTGTCCAACTTGGCAGTGGGCCGCTGGCGATGAGACCAAGACAAAA
CCCTACCTACCAAAGGATAAGCAATTCCTGATAACGCGCAATGTTCCCTG
CTATCGTCGCTGCAAGCAGATGGAATACGTCGGCGAGGAGACGCTGGTGG
AGGAGGAGTCCGGTGACGGCGGTTGGGTGGAGACTCATCAACTGAACGAT
GATGGCACCACCCAGCTGGAGGACAAGATCTGCGAACTGACAATGGAGGA
GACAAAGGAAGAAATGCACACTCCAGATAGCGACAAATCTGCGCCGGGCG
CTGGGGGCCAGGCTGAAGACGAGGACGACGACGAGGCTATTGACATGGAC
GATTTCGAGGAGAGCGGCATGCTGGAGCTGGTCGATCCGGCTGTAGCCAC
CACGACACGCAAGCCGGAGCCGGAAGCAAAGGCCAGCCCAGTGGCAGCCG
CATCGGGCGACGCGGAGGCCAGCGGTGACTCTGTGCTCCATACACGCACG
TACGACCTGCACATCAGCTATGATAAGTACTATCAGACGCCGCGACTCTG
GGTGGTGGGCTATGATGAGCAGCGCAAGCCACTGACCGTGGGAACAGATG
TACGAGGGATGTCTCGCAGGATCACGCGAAGAAAACTGTCACCCTTGGAG
TCCCATCCGCATCTTTCCAGGTCCCAATATGGCCTCTGTGCATCCATGTC
GGCATGCGGATATCATGAAAGAAAATTATACAGACGGTAGAGGAGGGCGG
CGGTCAGCTGGAAGTGCTTTATACCTGATCAATTTCTCAAATTCGTCAGA
ACCGTCATACCCACCAATCGAATACGAATTTACCCAAACTTCACATGTCT
GCAGCTTCCTAACCATTCGTTTGCGGCCGGCCCAGGTAGGTGTCTAATCT
TATCATATCATATCATATCTCACTAGCCTAGGAATCCTGGTCTGACTATG
CTTGAATCTCACCTTAAAACGCCGACGCAACCGAACCGTCTGACAAATCG
AATG
FMO06747.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:48:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atg3-RA | 1221 | CG6877-RA | 128..1121 | 5..1000 | 4570 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:48:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18749791..18750369 | 406..988 | 2345 | 96.6 | Plus |
| 3L | 28110227 | 3L | 18749547..18749739 | 216..408 | 965 | 100 | Plus |
| 3L | 28110227 | 3L | 18749336..18749479 | 73..216 | 705 | 99.3 | Plus |
| 3L | 28110227 | 3L | 18748814..18748890 | 5..81 | 370 | 98.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:48:16 has no hits.
FMO06747.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:01 Download gff for
FMO06747.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aut1-RA | 125..1125 | 1..1004 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-29 11:29:19 Download gff for
FMO06747.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aut1-RA | 104..1104 | 1..1004 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:19:38 Download gff for
FMO06747.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg3-RA | 125..1125 | 1..1004 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:19:38 Download gff for
FMO06747.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18748811..18748889 | 1..80 | 96 | -> | Plus |
| 3L | 18749344..18749479 | 81..216 | 100 | -> | Plus |
| 3L | 18749548..18749738 | 217..407 | 100 | -> | Plus |
| 3L | 18749793..18750387 | 408..1004 | 96 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:01 Download gff for
FMO06747.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18742444..18742579 | 81..216 | 100 | -> | Plus |
| arm_3L | 18741911..18741989 | 1..80 | 96 | -> | Plus |
| arm_3L | 18742648..18742838 | 217..407 | 100 | -> | Plus |
| arm_3L | 18742893..18743487 | 408..1004 | 96 | == | Plus |
