FMO06748.5prime Sequence
678 bp (677 high quality bases) assembled on 2008-10-01
> FMO06748.5prime
CGTTATCAGTCGACATGGCCCGGTTGAAGCTGAGGAAACTGGAGGAGTAC
CTGCAGGGCGTTGACGGTTTCGAGCAGCCCAAGATCCTGTTGGAACAGTA
CCCCACTCCGCCGCACATAGCCGCGTGCATGGCTCATCACATGCAGTCGC
AGCACGAGGACATCGAGGGAAAGCTGGTGGGAGATTTGGGCTGCGGCTGC
GGAATGCTCAGCATTGCTTCCACTCTGCTGGGCGCCCAGCTCACGGTGGG
CTTCGAACTGGACGGCGATGCCGTGGACACCTTTAGGGGCAATGTGGTGG
AGATGGAGCTACCCAATGTTGACTGCGTGCGGGCGGATGTGCTGCAGCTG
ATCGGCAGCAAGTGGGAGAAGTCCTTTGACACGGTGCTGATGAATCCCCC
ATTCGGCACGAAACACAATGCCGGCATGGACATGCGGTTTCTGGAGGTGG
CCCTACGGTTGGCCAACAGAGCAGTTTACTCCCTACACAAGACGTCAACA
CGGTCGTACATTCACAAAAAGGCACTGGAATGGGGCGCCCGCGGCTCAGT
GGTCGCCGAACTCCGGTACAACATCGACGCCAGCTACAAGTTTCAAAGCA
GAAGTCGAAGGATATTGAGGTGGACTTCTGGCGCTTTGAAATCGGCACGG
AAGCAAGCTTTCTAGACCATTCGTTTGG
FMO06748.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42374-RB | 1635 | CG42374-RB | 903..1541 | 15..652 | 3155 | 99.7 | Plus |
| CG42374-RA | 1227 | CG42374-RA | 495..1133 | 15..652 | 3155 | 99.7 | Plus |
| CG9666-RD | 1635 | CG9666-RD | 903..1541 | 15..652 | 3155 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19264956..19265445 | 15..504 | 2450 | 100 | Plus |
| 3L | 28110227 | 3L | 19266593..19266744 | 502..652 | 695 | 98.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:20:59 has no hits.
FMO06748.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:27 Download gff for
FMO06748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42374-RA | 489..1133 | 10..652 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:31:46 Download gff for
FMO06748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9666-RA | 894..1538 | 10..652 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:04 Download gff for
FMO06748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9666-RD | 897..1541 | 10..652 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:04 Download gff for
FMO06748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19264950..19265443 | 10..502 | 99 | -> | Plus |
| 3L | 19266594..19266744 | 503..652 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:27 Download gff for
FMO06748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19259694..19259844 | 503..652 | 98 | | Plus |
| arm_3L | 19258050..19258543 | 10..502 | 99 | -> | Plus |
