FMO06756.5prime Sequence
1115 bp (827 high quality bases) assembled on 2008-10-01
> FMO06756.5prime
CAGTCGACATGTCGGCCAGAAGAGCAACCCATGCAGGCAGCTGGTACACG
GACTCGGGCGCCGAGCTCTCGAGACAGTTGGATCGTTGGCTGGGTGCCGC
AGATTTGTCCCATGGACCGGCTCGTGCCATCATTGCTCCACATGCTGGAT
ATACGTACTGTGGAGCCTGCGCTGCCTTTGCCTATCGCCAAGTTAGCCCA
GTTGTCGTCAAGCGAATCTTCATACTGGGTCCCTCGCATCATGTGCGTCT
GCGTGGCTGCGCCTTATCCGTGGCGAAGAAGTACAGGACACCCCTCTATG
ATCTCAAAATTGATGCTCAGATCAACTCTGAGCTTGAGAAGACTGGAAAG
TTTTCTTGGATGGACATGAAGACTGACGAGGATGAACACTCCATCGAGAT
GCATTTACCCTACATTGCCAAAGTGATGGAGGCCTACAAGGATCAGTTCA
CCATTGTGCCTATTCTGGTGGGTTCGCTCAATCCCGAAACAGGAGGCGCA
GTACGGCAGCCTGCTGTCCTCGTATCTGATGGACCCCACCAATCTGTTTG
TGATATCTTCCGACTTTTGCCACTGGGGCCATCGCTTCAGCTATACCTAC
TATGACAGCTCCTGCGGGAGCGATTCACAAGTCCATCGAGAAGCTGGACA
AGCAGGGCATGGACATCATTGAGTCGCTCAATCCGCACTCCTTCACCGAG
TACTTGCGCAAGTACAACAATACGATATGCGGACGCCATCCCATCGGAGT
AATGCTAGGCGCCGTGAAGGCACTGCAGGATCGGGCTACGACAAGATGAG
TTTCAAGTTCCTCAAGTACGCCCAGAGCAGCCAGTGTCAAGACATTGAGA
CTCCAGGGTTAGCTACGCCTCCGGGATCGCTCGTCTTCAAATGGCAAGCT
TTCAGACATTCGTTTGGCGCGCGGGCCAGGTAATTGTTATAATCTAATCA
AATCATTATCTTATCACAATAAGCCTAGGAAATCCTGGCATGACAGTGCT
TGGATTCTCACCATAAATCGCCGGCGCACCGAGCGTTCTGAACAATCCCG
AATGGAGTTCGAGAGTCTTACTGGATTCTATTCACGGAGTCCAGCGAGAC
TCGATATTCAATTAC
FMO06756.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:19:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8031-RA | 1318 | CG8031-RA | 131..1009 | 9..888 | 4240 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:19:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13008693..13009146 | 888..434 | 2005 | 98.5 | Minus |
| 3R | 32079331 | 3R | 13009382..13009494 | 321..209 | 565 | 100 | Minus |
| 3R | 32079331 | 3R | 13009205..13009315 | 432..322 | 555 | 100 | Minus |
| 3R | 32079331 | 3R | 13009689..13009771 | 139..57 | 415 | 100 | Minus |
| 3R | 32079331 | 3R | 13009559..13009627 | 208..140 | 345 | 100 | Minus |
| 3R | 32079331 | 3R | 13011131..13011180 | 58..9 | 250 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:19:14 has no hits.
FMO06756.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:20 Download gff for
FMO06756.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8031-RA | 125..1022 | 1..899 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:27:54 Download gff for
FMO06756.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8031-RA | 70..967 | 1..899 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:11:10 Download gff for
FMO06756.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8031-RA | 125..1022 | 1..899 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:11:10 Download gff for
FMO06756.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13011132..13011186 | 1..57 | 92 | | Minus |
| 3R | 13008680..13009146 | 434..899 | 97 | <- | Minus |
| 3R | 13009204..13009315 | 322..433 | 99 | <- | Minus |
| 3R | 13009382..13009494 | 209..321 | 100 | <- | Minus |
| 3R | 13009559..13009627 | 140..208 | 100 | <- | Minus |
| 3R | 13009689..13009770 | 58..139 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:20 Download gff for
FMO06756.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8834402..8834868 | 434..899 | 97 | <- | Minus |
| arm_3R | 8834926..8835037 | 322..433 | 99 | <- | Minus |
| arm_3R | 8835104..8835216 | 209..321 | 100 | <- | Minus |
| arm_3R | 8835281..8835349 | 140..208 | 100 | <- | Minus |
| arm_3R | 8835411..8835492 | 58..139 | 100 | <- | Minus |
| arm_3R | 8836854..8836908 | 1..57 | 92 | | Minus |
