FMO06763.5prime Sequence
815 bp (815 high quality bases) assembled on 2008-10-01
> FMO06763.5prime
CTTATCAGTCGACATGAATTTTCTGTGGAAAGGACGCCGGTTTCTGATCG
CAGGCATCCTGCCAACATTCGAAGGCGCCGCAGATGAAATAGTCGATAAG
GAAAACAAAACATACAAGGCCTTTCTGGCCAGTAAACCACCAGAGGAAAC
AGGACTGGAGCGCCTCAAGCAAATGTTTACAATCGACGAGTTTGGCAGCA
TATCCTCCGAGCTTAACTCGGTTTACCAGGCCGGCTTCCTAGGATTCCTT
ATTGGAGCTATTTACGGCGGAGTTACACAATCGCGCGTGGCCTACATGAA
TTTCATGGAGAACAACCAGGCCACAGCATTTAAATCGCACTTTGATGCCA
AGAAAAAGCTGCAAGATCAATTCACAGTCAACTTTGCCAAAGGCGGCTTC
AAATGGGGCTGGCGAGTGGGACTTTTTACCACATCCTACTTCGGCATCAT
CACTTGTATGTCGGTGTACCGTGGAAAATCCTCAATCTACGAATACTTGG
CCGCTGGTTCCATCACCGGCTCGCTTTACAAAGTGAGTCTTGGTCTGCGG
GGCATGGCGGCAGGTGGAATCATTGGAGGTTTCTTGGGCGGCGTGGCTGG
TGTGACGTCGCTGCTGCTGATGAAAGCATCAGGGACCTCGATGGAAGAGG
TTCGCTACTGGCAGTACAAATGGCGACTCGATCGCGACGAAAACATTTCA
ACAGGCGTTCAAAAAACTGACAGAGGACGAAAACCCAGAGCTTTTCAAGG
CCCACGACGAGAAAACATCCGAACATGTATCGCTGGACACGATCAAGGCA
AGCTTTCTAGACCAT
FMO06763.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 140up-RB | 1200 | CG9852-RB | 73..855 | 14..797 | 3895 | 99.9 | Plus |
| 140up-RA | 937 | CG9852-RA | 73..855 | 14..797 | 3895 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14124508..14124862 | 797..442 | 1730 | 99.7 | Minus |
| 3R | 32079331 | 3R | 14125304..14125476 | 186..14 | 865 | 100 | Minus |
| 3R | 32079331 | 3R | 14125075..14125240 | 352..187 | 830 | 100 | Minus |
| 3R | 32079331 | 3R | 14124925..14125015 | 441..351 | 455 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:56:32 has no hits.
FMO06763.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:19:43 Download gff for
FMO06763.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 140up-RA | 73..855 | 14..797 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-01 13:27:43 Download gff for
FMO06763.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 140up-RA | 55..837 | 14..797 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:43:43 Download gff for
FMO06763.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 140up-RA | 73..855 | 14..797 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:43:43 Download gff for
FMO06763.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14124925..14125013 | 353..441 | 100 | <- | Minus |
| 3R | 14125075..14125240 | 187..352 | 100 | <- | Minus |
| 3R | 14125304..14125476 | 14..186 | 100 | | Minus |
| 3R | 14124508..14124862 | 442..797 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:19:43 Download gff for
FMO06763.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9950230..9950584 | 442..797 | 99 | <- | Minus |
| arm_3R | 9950647..9950735 | 353..441 | 100 | <- | Minus |
| arm_3R | 9950797..9950962 | 187..352 | 100 | <- | Minus |
| arm_3R | 9951026..9951198 | 14..186 | 100 | | Minus |
